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元搜索引擎 Metta 的设计与实现,旨在为系统评价者检索生物医学文献。

Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers.

机构信息

Department of Psychiatry and Psychiatric Institute, University of Illinois at Chicago, Chicago, IL 60612 USA.

Department of Computer Science, Binghamton University, Binghamton, NY USA.

出版信息

Health Inf Sci Syst. 2014 Jan 10;2:1. doi: 10.1186/2047-2501-2-1. eCollection 2014.

Abstract

BACKGROUND

Individuals and groups who write systematic reviews and meta-analyses in evidence-based medicine regularly carry out literature searches across multiple search engines linked to different bibliographic databases, and thus have an urgent need for a suitable metasearch engine to save time spent on repeated searches and to remove duplicate publications from initial consideration. Unlike general users who generally carry out searches to find a few highly relevant (or highly recent) articles, systematic reviewers seek to obtain a comprehensive set of articles on a given topic, satisfying specific criteria. This creates special requirements and challenges for metasearch engine design and implementation.

METHODS

We created a federated search tool that is connected to five databases: PubMed, EMBASE, CINAHL, PsycINFO, and the Cochrane Central Register of Controlled Trials. Retrieved bibliographic records were shown online; optionally, results could be de-duplicated and exported in both BibTex and XML format.

RESULTS

The query interface was extensively modified in response to feedback from users within our team. Besides a general search track and one focused on human-related articles, we also added search tracks optimized to identify case reports and systematic reviews. Although users could modify preset search options, they were rarely if ever altered in practice. Up to several thousand retrieved records could be exported within a few minutes. De-duplication of records returned from multiple databases was carried out in a prioritized fashion that favored retaining citations returned from PubMed.

CONCLUSIONS

Systematic reviewers are used to formulating complex queries using strategies and search tags that are specific for individual databases. Metta offers a different approach that may save substantial time but which requires modification of current search strategies and better indexing of randomized controlled trial articles. We envision Metta as one piece of a multi-tool pipeline that will assist systematic reviewers in retrieving, filtering and assessing publications. As such, Metta may find wide utility for anyone who is carrying out a comprehensive search of the biomedical literature.

摘要

背景

在循证医学中,撰写系统评价和荟萃分析的个人和团体经常在多个搜索引擎上进行文献搜索,这些搜索引擎与不同的书目数据库相关联,因此迫切需要一个合适的元搜索引擎来节省重复搜索的时间,并从最初的考虑中删除重复的出版物。与通常进行搜索以查找少数几个高度相关(或高度最近)文章的普通用户不同,系统评价者寻求获得关于给定主题的一套全面的文章,满足特定的标准。这为元搜索引擎的设计和实现创造了特殊的要求和挑战。

方法

我们创建了一个联合搜索工具,该工具连接到五个数据库:PubMed、EMBASE、CINAHL、PsycINFO 和 Cochrane 中央对照试验注册库。检索到的书目记录在线显示;可以选择将结果去重并以 BibTex 和 XML 格式导出。

结果

根据我们团队内部用户的反馈,广泛修改了查询界面。除了一般搜索跟踪和一个专注于与人相关的文章的搜索跟踪外,我们还添加了针对识别病例报告和系统评价的搜索跟踪。尽管用户可以修改预设的搜索选项,但实际上很少进行更改。在几分钟内可以导出多达数千条检索记录。从多个数据库返回的记录去重是按照优先顺序进行的,优先保留从 PubMed 返回的引用。

结论

系统评价者习惯于使用针对特定数据库的复杂查询策略和搜索标签来制定查询。Metta 提供了一种不同的方法,可能会节省大量时间,但需要修改当前的搜索策略并更好地索引随机对照试验文章。我们设想 Metta 是一个多工具管道的一部分,该管道将帮助系统评价者检索、过滤和评估出版物。因此,Metta 可能会广泛用于任何正在进行生物医学文献全面搜索的人。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/439a/4375844/022490de03e0/13755_2013_20_Fig1_HTML.jpg

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