利用Illumina和PacBio技术对II型聚酮类抗生素阿齐霉素的产生菌放线菌Kibdelosporangium sp. MJ126-NF4进行高质量基因组草图测序
High-Quality Draft Genome Sequence of Actinobacterium Kibdelosporangium sp. MJ126-NF4, Producer of Type II Polyketide Azicemicins, Using Illumina and PacBio Technologies.
作者信息
Ogasawara Yasushi, Torrez-Martinez Norah, Aragon Anthony D, Yackley Benjamin J, Weber Jessica A, Sundararajan Anitha, Ramaraj Thiruvarangan, Edwards Jeremy S, Melançon Charles E
机构信息
Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico, USA.
Department of Molecular Genetics and Microbiology, University of New Mexico Health Sciences Center, Albuquerque, New Mexico, USA.
出版信息
Genome Announc. 2015 Apr 2;3(2):e00114-15. doi: 10.1128/genomeA.00114-15.
Abstract
Here, we report the high-quality draft genome sequence of actinobacterium Kibdelosporangium sp. MJ126-NF4, producer of the type II polyketide azicemicins, obtained using Illumina and PacBio sequencing technologies. The 11.75-Mbp genome contains >11,000 genes and 22 polyketide and nonribosomal peptide natural product gene clusters.
摘要
在此，我们报告了放线菌Kibdelosporangium sp. MJ126-NF4的高质量基因组草图序列，该菌株是II型聚酮化合物氮杂霉素的产生菌，使用Illumina和PacBio测序技术获得。该1175万碱基对的基因组包含超过11000个基因以及22个聚酮化合物和非核糖体肽天然产物基因簇。
相似文献
1
High-Quality Draft Genome Sequence of Actinobacterium Kibdelosporangium sp. MJ126-NF4, Producer of Type II Polyketide Azicemicins, Using Illumina and PacBio Technologies.利用Illumina和PacBio技术对II型聚酮类抗生素阿齐霉素的产生菌放线菌Kibdelosporangium sp. MJ126-NF4进行高质量基因组草图测序
Genome Announc. 2015 Apr 2;3(2):e00114-15. doi: 10.1128/genomeA.00114-15.
2
Biosynthetic studies of aziridine formation in azicemicins.在阿扎西米星中氮杂环丙烷形成的生物合成研究。
J Am Chem Soc. 2009 Dec 23;131(50):18066-8. doi: 10.1021/ja907307h.
3
Complete Genome Sequence of Streptomyces venezuelae ATCC 15439, Producer of the Methymycin/Pikromycin Family of Macrolide Antibiotics, Using PacBio Technology.利用PacBio技术测定委内瑞拉链霉菌ATCC 15439（甲基霉素/苦霉素家族大环内酯类抗生素的产生菌）的全基因组序列
Genome Announc. 2016 May 5;4(3):e00337-16. doi: 10.1128/genomeA.00337-16.
4
High-Quality Draft Genome Sequence of the Actinobacterium Nocardia terpenica IFM 0406, Producer of the Immunosuppressant Brasilicardins, Using Illumina and PacBio Technologies.利用Illumina和PacBio技术对免疫抑制剂巴西他汀产生菌——诺卡氏菌属萜烯诺卡氏菌IFM 0406进行高质量基因组草图测序
Genome Announc. 2016 Dec 15;4(6):e01391-16. doi: 10.1128/genomeA.01391-16.
5
Draft Genome Sequence of an Anthracimycin Producer, Streptomyces sp. TP-A0875.蒽环霉素产生菌链霉菌属TP-A0875的基因组序列草图
Genome Announc. 2015 Oct 8;3(5):e01149-15. doi: 10.1128/genomeA.01149-15.
6
Draft genome sequence data of the endophytic actinobacterium WPN32, a potential bioactive compounds producer.内生放线菌WPN32的基因组序列数据草图，WPN32是一种潜在的生物活性化合物生产者。
Data Brief. 2023 Nov 26;52:109844. doi: 10.1016/j.dib.2023.109844. eCollection 2024 Feb.
7
Draft Genome Sequence of sp. Strain LRS4.154, a Moderately Halophilic Actinobacterium with the Biotechnologically Relevant Polyketide Synthase and Nonribosomal Peptide Synthetase Systems.嗜盐放线菌菌株LRS4.154的基因组草图序列，该菌株是一种中度嗜盐放线菌，具有与生物技术相关的聚酮合酶和非核糖体肽合成酶系统。
Genome Announc. 2017 May 25;5(21):e00392-17. doi: 10.1128/genomeA.00392-17.
8
Draft Genome Sequence of Streptomyces sp. TP-A0871, a Producer of Heronamide C.苍鹭酰胺C产生菌链霉菌属TP-A0871的基因组序列草图
Genome Announc. 2015 Dec 10;3(6):e01429-15. doi: 10.1128/genomeA.01429-15.
9
Complete Genome Sequence of sp. CA-230715, Encoding a 35-Module Type I Polyketide Synthase.编码35模块I型聚酮合酶的sp. CA-230715的全基因组序列
Microbiol Resour Announc. 2021 Sep 23;10(38):e0080521. doi: 10.1128/MRA.00805-21.
10
Azicemicins A and B, new antimicrobial agents produced by Amycolatopsis. II. Structure determination.阿齐霉素A和B，由拟无枝酸菌产生的新型抗菌剂。II. 结构测定。
J Antibiot (Tokyo). 1995 Oct;48(10):1148-52. doi: 10.7164/antibiotics.48.1148.
引用本文的文献
1
High-Quality Draft Genome Sequence of Kibdelosporangium philippinense, Generated by Hybrid Assembly of Short and Long Sequencing Reads.通过短读长和长读长测序的混合组装生成的菲律宾基德孢囊菌高质量基因组草图序列
Microbiol Resour Announc. 2022 Apr 21;11(4):e0002022. doi: 10.1128/mra.00020-22. Epub 2022 Apr 4.
2
Natural Product Discovery through Improved Functional Metagenomics in Streptomyces.通过改进的链霉菌功能宏基因组学进行天然产物发现。
J Am Chem Soc. 2016 Aug 3;138(30):9341-4. doi: 10.1021/jacs.6b02921. Epub 2016 Jul 22.
3
Functional Characterization of a Ketoreductase-Encoding Gene med-ORF12 Involved in the Formation of a Stereospecific Pyran Ring during the Biosynthesis of an Antitumor Antibiotic Medermycin.一个参与抗肿瘤抗生素麦地霉素生物合成过程中立体特异性吡喃环形成的酮还原酶编码基因med-ORF12的功能表征
PLoS One. 2015 Jul 10;10(7):e0132431. doi: 10.1371/journal.pone.0132431. eCollection 2015.
本文引用的文献
1
Expanding our understanding of sequence-function relationships of type II polyketide biosynthetic gene clusters: bioinformatics-guided identification of Frankiamicin A from Frankia sp. EAN1pec.拓展我们对II型聚酮生物合成基因簇序列-功能关系的理解：基于生物信息学从Frankia sp. EAN1pec中鉴定出弗兰基霉素A。
PLoS One. 2015 Apr 2;10(4):e0121505. doi: 10.1371/journal.pone.0121505. eCollection 2015.
2
Direct cloning and refactoring of a silent lipopeptide biosynthetic gene cluster yields the antibiotic taromycin A.直接克隆和重构一个沉默的脂肽生物合成基因簇可得到抗生素塔柔霉素 A。
Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):1957-62. doi: 10.1073/pnas.1319584111. Epub 2014 Jan 21.
3
Emerging trends in the discovery of natural product antibacterials.天然产物抗菌药物发现的新兴趋势。
Curr Opin Pharmacol. 2013 Oct;13(5):678-87. doi: 10.1016/j.coph.2013.07.002. Epub 2013 Jul 24.
4
antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers.antiSMASH 2.0——一个用于次级代谢产物产生菌基因组挖掘的通用平台。
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W204-12. doi: 10.1093/nar/gkt449. Epub 2013 Jun 3.
5
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
6
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.SOAPdenovo2：一种经验丰富的、内存效率高的短读长从头组装器。
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
7
Antibiotics as signal molecules.抗生素作为信号分子。
Chem Rev. 2011 Sep 14;111(9):5492-505. doi: 10.1021/cr2000509. Epub 2011 Jul 25.
8
Rare actinomycetes: a potential storehouse for novel antibiotics.稀有放线菌：新型抗生素的潜在宝库。
Crit Rev Biotechnol. 2012 Jun;32(2):108-32. doi: 10.3109/07388551.2011.562482. Epub 2011 May 27.
9
Engineering Streptomyces coelicolor for heterologous expression of secondary metabolite gene clusters.工程化变铅青链霉菌用于异源表达次级代谢产物基因簇。
Microb Biotechnol. 2011 Mar;4(2):207-15. doi: 10.1111/j.1751-7915.2010.00219.x. Epub 2010 Oct 26.
10
Natural products version 2.0: connecting genes to molecules.天然产物 2.0 版：将基因与分子联系起来。
J Am Chem Soc. 2010 Mar 3;132(8):2469-93. doi: 10.1021/ja909118a.
Zotero 插件