Jenkins Claire, Dallman Timothy J, Launders Naomi, Willis Caroline, Byrne Lisa, Jorgensen Frieda, Eppinger Mark, Adak Goutam K, Aird Heather, Elviss Nicola, Grant Kathie A, Morgan Dilys, McLauchlin Jim
Gastrointestinal Bacteria Reference Unit, Public Health England, Colindale, London, United Kingdom
Gastrointestinal Bacteria Reference Unit, Public Health England, Colindale, London, United Kingdom.
Appl Environ Microbiol. 2015 Jun 15;81(12):3946-52. doi: 10.1128/AEM.04188-14. Epub 2015 Apr 3.
An increase in the number of cases of Shiga toxin-producing Escherichia coli (STEC) O157 phage type 2 (PT2) in England in September 2013 was epidemiologically linked to watercress consumption. Whole-genome sequencing (WGS) identified a phylogenetically related cluster of 22 cases (outbreak 1). The isolates comprising this cluster were not closely related to any other United Kingdom strain in the Public Health England WGS database, suggesting a possible imported source. A second outbreak of STEC O157 PT2 (outbreak 2) was identified epidemiologically following the detection of outbreak 1. Isolates associated with outbreak 2 were phylogenetically distinct from those in outbreak 1. Epidemiologically unrelated isolates on the same branch as the outbreak 2 cluster included those from human cases in England with domestically acquired infection and United Kingdom domestic cattle. Environmental sampling using PCR resulted in the isolation of STEC O157 PT2 from irrigation water at one implicated watercress farm, and WGS showed this isolate belonged to the same phylogenetic cluster as outbreak 2 isolates. Cattle were in close proximity to the watercress bed and were potentially the source of the second outbreak. Transfer of STEC from the field to the watercress bed may have occurred through wildlife entering the watercress farm or via runoff water. During this complex outbreak investigation, epidemiological studies, comprehensive testing of environmental samples, and the use of novel molecular methods proved invaluable in demonstrating that two simultaneous outbreaks of STEC O157 PT2 were both linked to the consumption of watercress but were associated with different sources of contamination.
2013年9月,英格兰产志贺毒素大肠杆菌(STEC)O157噬菌体2型(PT2)病例数增加,经流行病学调查与食用水田芥有关。全基因组测序(WGS)确定了一个由22例病例组成的系统发育相关集群(疫情1)。构成该集群的分离株与英国公共卫生部门WGS数据库中的任何其他英国菌株均无密切关系,提示可能有输入来源。在检测到疫情1后,经流行病学调查确定了STEC O157 PT2的第二次疫情(疫情2)。与疫情2相关的分离株在系统发育上与疫情1中的分离株不同。与疫情2集群在同一分支上的流行病学无关分离株包括来自英格兰本土感染的人类病例和英国国内牛群的分离株。使用PCR进行环境采样,在一个涉案水田芥农场的灌溉水中分离出STEC O157 PT2,WGS显示该分离株与疫情2分离株属于同一系统发育集群。牛群靠近水田芥种植床,可能是第二次疫情的源头。STEC可能通过进入水田芥农场的野生动物或径流从田地转移到水田芥种植床。在这次复杂的疫情调查中,流行病学研究、环境样本的全面检测以及新型分子方法的应用在证明STEC O157 PT2的两次同时爆发均与食用水田芥有关但与不同污染源相关方面发挥了巨大作用。