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源自阿斯帕拉托叶木蓝的小分子靶向受体酪氨酸激酶的计算机模拟药代动力学和分子对接研究

In silico pharmacokinetic and molecular docking studies of small molecules derived from Indigofera aspalathoides Vahl targeting receptor tyrosine kinases.

作者信息

Paramashivam Sathish Kumar, Elayaperumal Kalaivani, Natarajan Boopala Bhagavan, Ramamoorthy Manjula Devi, Balasubramanian Suganthana, Dhiraviam Kannan Narayanan

机构信息

Department of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai-625021, Tamil Nadu,India.

Department of Chemistry, Fatima College, Maryland, Madurai-625018.

出版信息

Bioinformation. 2015 Feb 28;11(2):73-84. doi: 10.6026/97320630011073. eCollection 2015.

Abstract

Angiogenesis is the formation of new blood vessels from preexisting vascular network that plays an important role in the tumor growth, invasion and metastasis. Anti-angiogenesis targeting tyrosine kinases such as vascular endothelial growth factor receptor 2 (VEGFR2) and platelet derived growth factor receptor β (PDGFRβ) constitutes a successful target for the treatment of cancer. In this work, molecular docking studies of three bioflavanoid such as indigocarpan, mucronulatol, indigocarpan diacetate and two diterpenes namely erythroxydiol X and Y derived from Indigofera aspalathoides as PDGFRβ and VEGFR2 inhibitors were performed using computational tools. The crystal structures of two target proteins were retrieved from PDB website. Among the five compounds investigated, indigocarpan exhibited potent binding energy ΔG = -7.04 kcal/mol with VEGFR2 and ΔG = -4.82 with PDGFRβ compared to commercially available anti-angiogenic drug sorafenib (positive control). Our results strongly suggested that indigocarpan is a potent angiogenesis inhibitor as ascertained by its potential interaction with VEGFR2 and PDGFRβ. This hypothesis provides a better insight to control metastasis by blocking angiogenesis.

摘要

血管生成是指从预先存在的血管网络形成新的血管,这在肿瘤生长、侵袭和转移中起着重要作用。靶向酪氨酸激酶(如血管内皮生长因子受体2(VEGFR2)和血小板衍生生长因子受体β(PDGFRβ))的抗血管生成是癌症治疗的一个成功靶点。在这项工作中,使用计算工具对三种生物类黄酮(如靛蓝果聚糖、粘毛酚、靛蓝果聚糖二乙酸酯)以及两种从阿斯帕拉托叶木蓝中提取的二萜(即赤藓二醇X和Y)作为PDGFRβ和VEGFR2抑制剂进行了分子对接研究。从蛋白质数据银行(PDB)网站检索了两种靶蛋白的晶体结构。在所研究的五种化合物中,与市售抗血管生成药物索拉非尼(阳性对照)相比,靛蓝果聚糖与VEGFR2的结合能ΔG = -7.04千卡/摩尔,与PDGFRβ的结合能ΔG = -4.82。我们的结果强烈表明,靛蓝果聚糖是一种有效的血管生成抑制剂,这通过其与VEGFR2和PDGFRβ的潜在相互作用得以确定。这一假设为通过阻断血管生成来控制转移提供了更好的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/27af/4369682/fd7f2c1b6a7b/97320630011073F1.jpg

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