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量化细胞容量可确定具有降低负担的基因表达设计。

Quantifying cellular capacity identifies gene expression designs with reduced burden.

机构信息

1] Centre for Synthetic Biology and Innovation, Imperial College London, London, UK. [2] Department of Bioengineering, Imperial College London, London, UK.

出版信息

Nat Methods. 2015 May;12(5):415-8. doi: 10.1038/nmeth.3339. Epub 2015 Apr 6.

DOI:10.1038/nmeth.3339
PMID:25849635
Abstract

Heterologous gene expression can be a significant burden for cells. Here we describe an in vivo monitor that tracks changes in the capacity of Escherichia coli in real time and can be used to assay the burden imposed by synthetic constructs and their parts. We identify construct designs with reduced burden that predictably outperformed less efficient designs, despite having equivalent output.

摘要

异源基因表达可能会给细胞带来很大负担。在这里,我们描述了一种体内监测器,它可以实时跟踪大肠杆菌的能力变化,并可用于测定合成构建体及其部分带来的负担。我们发现,尽管输出等效,但具有较低负担的构建体设计可预测性地优于效率较低的设计。

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Science. 2014 Nov 14;346(6211):1256272. doi: 10.1126/science.1256272.
2
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J Biol Chem. 2014 Oct 10;289(41):28160-71. doi: 10.1074/jbc.M114.593277. Epub 2014 Aug 22.
3
Principles of genetic circuit design.
研究合成细菌群落中分工协作生产紫菌素的潜力。
ACS Synth Biol. 2025 Jul 18;14(7):2703-2709. doi: 10.1021/acssynbio.5c00120. Epub 2025 Jun 17.
4
Bioenergetic stress potentiates antimicrobial resistance and persistence.生物能量应激会增强抗菌素耐药性和持续性。
Nat Commun. 2025 Jun 9;16(1):5111. doi: 10.1038/s41467-025-60302-6.
5
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Elife. 2025 Jun 5;12:RP89170. doi: 10.7554/eLife.89170.
6
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ACS Synth Biol. 2025 Jun 20;14(6):2012-2029. doi: 10.1021/acssynbio.4c00828. Epub 2025 May 29.
7
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J Biol Eng. 2025 May 23;19(1):50. doi: 10.1186/s13036-025-00521-z.
8
Resource competition-driven bistability and stochastic switching amplify gene expression noise.资源竞争驱动的双稳态和随机切换放大了基因表达噪声。
PLoS Comput Biol. 2025 Apr 23;21(4):e1012931. doi: 10.1371/journal.pcbi.1012931. eCollection 2025 Apr.
9
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