Taketani Rodrigo Gouvêa, Kavamura Vanessa Nessner, Mendes Rodrigo, Melo Itamar Soares
Laboratory of Environmental Microbiology, Embrapa Environment, Brazilian Agricultural Research Corporation-EMBRAPA, Jaguariuna, São Paulo, Brazil.
Environ Microbiol Rep. 2015 Feb;7(1):95-101. doi: 10.1111/1758-2229.12187.
Semiarid environments are characterized by the uneven spread of rain throughout the year. This leads to the establishment of a biota that can go through long periods without rain. In order to understand the dynamics of rhizosphere microbial communities across these contrasting seasons in Caatinga, we used the Ion Torrent platform to sequence the metagenome of the rhizosphere of a native leguminous plant (Mimosa tenuiflora). The annotation indicated that most abundant groups detected were the Actinobacteria and Proteobacteria, and the dominant functional groups were carbohydrate and protein metabolisms, and that in the wet season, the communities carried carbohydrate and amino acid metabolisms.The major differences observed between seasons were higher abundance of genes related to carbohydrate and amino acid metabolisms in the rainy season, indicating that the populations present might be better adapted to a higher abundance of organic matter. Besides, no clear separation of samples was detected based on their taxonomic composition whereas the functional composition indicates that samples from the rain season are more related. Altogether, our results indicate that there is al arge functional stability in these communities mostly due to the selection of features that aid the biota to endure the dry season and blossom during rain.
半干旱环境的特点是全年降雨分布不均。这导致了一种生物群的形成,它们可以经历长时间的无雨期。为了了解卡廷加地区这些截然不同季节中根际微生物群落的动态,我们使用离子激流平台对一种本地豆科植物(细叶含羞草)根际的宏基因组进行测序。注释表明,检测到的最丰富的类群是放线菌和变形菌,主要功能类群是碳水化合物和蛋白质代谢,并且在雨季,群落进行碳水化合物和氨基酸代谢。不同季节之间观察到的主要差异是雨季中与碳水化合物和氨基酸代谢相关的基因丰度更高,这表明现存的种群可能更适应较高丰度的有机物。此外,基于分类组成未检测到样本的明显分离,而功能组成表明雨季的样本相关性更强。总之,我们的结果表明这些群落存在很大的功能稳定性,这主要是由于选择了有助于生物群忍受旱季并在雨季开花的特征。