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利用分子标记评估印度本土姜黄(姜黄属植物)种质的遗传多样性。

Assessment of genetic diversity in indigenous turmeric (Curcuma longa) germplasm from India using molecular markers.

作者信息

Verma Sushma, Singh Shweta, Sharma Suresh, Tewari S K, Roy R K, Goel A K, Rana T S

机构信息

CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow, 226001 India.

出版信息

Physiol Mol Biol Plants. 2015 Apr;21(2):233-42. doi: 10.1007/s12298-015-0286-2. Epub 2015 Mar 20.

Abstract

Curcuma longa L., commonly known as turmeric, is one of the economically and medicinally important plant species. It is predominantly cultivated in the tropical and sub tropical countries. India is the largest producer, and exporter of turmeric in the world, followed by China, Indonesia, Bangladesh and Thailand. In the present study, Directed Amplification of Minisatellite DNA (DAMD) and Inter Simple Sequence Repeats (ISSR), methods were used to estimate the genetic variability in indigenous turmeric germplasm. Cumulative data analysis for DAMD (15) and ISSR (13) markers resulted into 478 fragments, out of which 392 fragments were polymorphic, revealing 82 % polymorphism across the turmeric genotypes. Wide range of pairwise genetic distances (0.03-0.59) across the genotypes revealed that these genotypes are genetically quite diverse. The UPGMA dendrogram generated using cumulative data showed significant relationships amongst the genotypes. All 29 genotypes studied grouped into two clusters irrespective of their geographical affiliations with 100 % bootstrap value except few genotypes, suggesting considerable diversity amongst the genotypes. These results suggested that the current collection of turmeric genotypes preserve the vast majority of natural variations. The results further demonstrate the efficiency and reliability of DAMD and ISSR markers in determining the genetic diversity and relationships among the indigenous turmeric germplasm. DAMD and ISSR profiling have identified diverse turmeric genotypes, which could be further utilized in various genetic improvement programmes including conventional as well as marker assisted breeding towards development of new and desirable turmeric genotypes.

摘要

姜黄,通常被称为姜黄属植物,是经济和药用方面重要的植物物种之一。它主要在热带和亚热带国家种植。印度是世界上最大的姜黄生产国和出口国,其次是中国、印度尼西亚、孟加拉国和泰国。在本研究中,使用了微卫星DNA定向扩增(DAMD)和简单序列重复区间(ISSR)方法来估计本土姜黄种质的遗传变异性。对DAMD(15个)和ISSR(13个)标记的累积数据分析产生了478个片段,其中392个片段具有多态性,表明姜黄基因型间的多态性为82%。各基因型间广泛的成对遗传距离(0.03 - 0.59)表明这些基因型在遗传上差异很大。使用累积数据生成的UPGMA树形图显示了基因型之间的显著关系。除少数基因型外,所有研究的29个基因型无论其地理归属如何都以100%的自展值分为两个聚类,这表明基因型之间存在相当大的差异。这些结果表明,目前收集的姜黄基因型保留了绝大多数自然变异。结果进一步证明了DAMD和ISSR标记在确定本土姜黄种质的遗传多样性和关系方面的效率和可靠性。DAMD和ISSR分析鉴定出了不同的姜黄基因型,这些基因型可进一步用于各种遗传改良计划,包括传统育种以及标记辅助育种,以培育新的和理想的姜黄基因型。

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