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利用ISSR和DAMD标记分析阿联酋选定海枣(L.)品种的遗传变异性。

Genetic variability in selected date palm ( L.) cultivars of United Arab Emirates using ISSR and DAMD markers.

作者信息

Purayil Fayas T, Robert Gabriel A, Gothandam Kodiveri M, Kurup Shyam S, Subramaniam Sreeramanan, Cheruth Abdul Jaleel

机构信息

1Department of Aridland Agriculture, College of Food and Agriculture, United Arab Emirates University, P.O. Box 15551, Al-Ain, United Arab Emirates.

2Department of Botany, A.V.C College (Autonomous), Mannampandal, Tamil Nadu India.

出版信息

3 Biotech. 2018 Feb;8(2):109. doi: 10.1007/s13205-018-1108-3. Epub 2018 Feb 2.

Abstract

Nine (9) different date palm ( L.) cultivars from UAE, which differ in their flower timings were selected to determine the polymorphism and genetic relationship between these cultivars. Hereditary differences and interrelationships were assessed utilizing inter-simple sequence repeat (ISSR) and directed amplification of minisatellite DNA region (DAMD) primers. Analysis on eight DAMD and five ISSR markers produced total of 113 amplicon including 99 polymorphic and 14 monomorphic alleles with a polymorphic percentage of 85.45. The average polymorphic information content for the two-marker system was almost similar (DAMD, 0.445 and ISSR, 0.459). UPGMA based clustering of DAMD and ISSR revealed that mid-season cultivars, Mkh (Khlas) and MB (Barhee) grouped together to form a subcluster in both the marker systems. The genetic similarity analysis followed by clustering of the cumulative data from the DAMD and ISSR resulted in two major clusters with two early-season cultivars (ENg and Ekn), two mid-season cultivars (MKh and MB) and one late-season cultivar (Lkhs) in cluster 1, cluster 2 includes two late-season cultivars, one early-season cultivar and one mid-season cultivar. The cluster analysis of both DAMD and ISSR marker revealed that, the patterns of variation between some of the tested cultivars were similar in both DNA marker systems. Hence, the present study signifies the applicability of DAMD and ISSR marker system in detecting genetic diversity of date palm cultivars flowering at different seasons. This may facilitate the conservation and improvement of date palm cultivars in the future.

摘要

从阿联酋选取了9个花期不同的海枣(L.)品种,以确定这些品种之间的多态性和遗传关系。利用简单序列重复区间(ISSR)和小卫星DNA区域定向扩增(DAMD)引物评估遗传差异和相互关系。对8个DAMD和5个ISSR标记进行分析,共产生113个扩增子,包括99个多态性等位基因和14个单态性等位基因,多态性百分比为85.45。两种标记系统的平均多态信息含量几乎相似(DAMD为0.445,ISSR为0.459)。基于UPGMA的DAMD和ISSR聚类分析表明,中季品种Mkh(Khlas)和MB(Barhee)在两种标记系统中都聚在一起形成一个亚群。对DAMD和ISSR的累积数据进行遗传相似性分析并聚类后,得到两个主要聚类,聚类1中有两个早季品种(ENg和Ekn)、两个中季品种(MKh和MB)和一个晚季品种(Lkhs),聚类2包括两个晚季品种、一个早季品种和一个中季品种。DAMD和ISSR标记的聚类分析表明,一些受试品种在两种DNA标记系统中的变异模式相似。因此,本研究表明DAMD和ISSR标记系统在检测不同季节开花的海枣品种遗传多样性方面的适用性。这可能有助于未来海枣品种的保护和改良。

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