Mishra Priyanka, Kumar L Dinesh, Kumar Amit, Gokul Sivaraman, Ravikumar Kaliamoorthy, Shukla Ashutosh K, Sundaresan Velusamy
Department of Plant Biology and Systematics, CSIR-Central Institute of Medicinal and Aromatic Plants, Research Centre, Bangalore, 560065, India.
Appl Biochem Biotechnol. 2015 Jul;176(5):1413-30. doi: 10.1007/s12010-015-1654-7. Epub 2015 May 13.
Decalepis arayalpathra, a critically endangered plant species, has a restricted and fragmented population in Southern Western Ghats, India. This study is a first attempt to evaluate genetic diversity and population structure in the nine wild populations of D. arayalpathra based on molecular pattern realized through the marker assays. Principal coordinate analysis (PCoA) and Nei's unweighted pair-group method with arithmetic average (UPGMA)-based hierarchical clustering of both the marker assays suggest strong genetic clustering between the individuals corresponding to their geographical ranges. Mantel test also corroborates a close genetic proximity between genetic and geographic data (r = 0.389). Population genetic analysis revealed low levels of gene flow [inter-simple sequence repeat (ISSR) = 0.289 and random amplified polymorphic DNA (RAPD) = 0.847] between the populations, in line with high genetic differentiation (Gst = 0.531 with ISSR and 0.440 with RAPD), which was also supported by analysis of molecular variance (AMOVA), that 54 % (ISSR) and 64 % (RAPD) total variation resided within populations. Bayesian model-based STRUCTURE analysis detected three genetic clusters showing the high degree of admixture within population. Based on the findings, such as inbreeding depression and the loss of genetic diversity, suggestions for conservation strategies are provided to preserve the genetic resources of this endangered species.
Decalepis arayalpathra是一种极度濒危的植物物种,在印度西高止山脉南部的种群数量有限且分布零散。本研究首次尝试基于通过标记分析实现的分子模式,评估D. arayalpathra九个野生种群的遗传多样性和种群结构。两种标记分析的主坐标分析(PCoA)和基于内氏不加权算术平均法(UPGMA)的层次聚类表明,对应于其地理范围的个体之间存在强烈的遗传聚类。Mantel检验也证实了遗传数据和地理数据之间存在密切的遗传接近性(r = 0.389)。种群遗传分析显示种群间的基因流水平较低[简单序列重复区间(ISSR)= 0.289,随机扩增多态性DNA(RAPD)= 0.847],这与高度的遗传分化一致(ISSR的Gst = 0.531,RAPD的Gst = 0.440),分子方差分析(AMOVA)也支持这一点,即54%(ISSR)和64%(RAPD)的总变异存在于种群内。基于贝叶斯模型的STRUCTURE分析检测到三个遗传聚类,表明种群内存在高度混合。基于近亲繁殖衰退和遗传多样性丧失等研究结果,为保护这一濒危物种的遗传资源提供了保护策略建议。