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海洋蓝细菌聚球藻不同分离株的基因组。

Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus.

机构信息

Department of Civil and Environmental Engineering, Massachusetts Institute of Technology , Cambridge, Massachusetts, USA.

Department of Civil and Environmental Engineering, Massachusetts Institute of Technology , Cambridge, Massachusetts, USA ; Microbiology Graduate Program, Massachusetts Institute of Technology , Cambridge, Massachusetts, USA.

出版信息

Sci Data. 2014 Sep 30;1:140034. doi: 10.1038/sdata.2014.34. eCollection 2014.

Abstract

The marine cyanobacterium Prochlorococcus is the numerically dominant photosynthetic organism in the oligotrophic oceans, and a model system in marine microbial ecology. Here we report 27 new whole genome sequences (2 complete and closed; 25 of draft quality) of cultured isolates, representing five major phylogenetic clades of Prochlorococcus. The sequenced strains were isolated from diverse regions of the oceans, facilitating studies of the drivers of microbial diversity-both in the lab and in the field. To improve the utility of these genomes for comparative genomics, we also define pre-computed clusters of orthologous groups of proteins (COGs), indicating how genes are distributed among these and other publicly available Prochlorococcus genomes. These data represent a significant expansion of Prochlorococcus reference genomes that are useful for numerous applications in microbial ecology, evolution and oceanography.

摘要

海洋蓝藻原绿球藻是贫营养海洋中数量上占优势的光合生物,也是海洋微生物生态学的一个模式系统。在这里,我们报告了 27 个新的全基因组序列(2 个完整和封闭;25 个草图质量),代表了原绿球藻的五个主要系统发育枝。这些测序菌株是从海洋的不同区域分离出来的,这有助于在实验室和野外研究微生物多样性的驱动因素。为了提高这些基因组在比较基因组学中的实用性,我们还定义了预先计算的蛋白质直系同源簇(COG),表明这些和其他公开的原绿球藻基因组中的基因是如何分布的。这些数据代表了原绿球藻参考基因组的显著扩展,这些基因组对于微生物生态学、进化和海洋学的许多应用非常有用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7685/4421930/02f1deb35edb/sdata201434-f1.jpg

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