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用于魔角旋转核磁共振归属的单谱中的蛋白质残基连接

Protein residue linking in a single spectrum for magic-angle spinning NMR assignment.

作者信息

Andreas Loren B, Stanek Jan, Le Marchand Tanguy, Bertarello Andrea, Cala-De Paepe Diane, Lalli Daniela, Krejčíková Magdaléna, Doyen Camille, Öster Carl, Knott Benno, Wegner Sebastian, Engelke Frank, Felli Isabella C, Pierattelli Roberta, Dixon Nicholas E, Emsley Lyndon, Herrmann Torsten, Pintacuda Guido

机构信息

Centre de RMN à Très Hauts Champs, Institut des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Université de Lyon, 69100, Villeurbanne, France.

出版信息

J Biomol NMR. 2015 Jul;62(3):253-61. doi: 10.1007/s10858-015-9956-1. Epub 2015 Jun 16.

Abstract

Here we introduce a new pulse sequence for resonance assignment that halves the number of data sets required for sequential linking by directly correlating sequential amide resonances in a single diagonal-free spectrum. The method is demonstrated with both microcrystalline and sedimented deuterated proteins spinning at 60 and 111 kHz, and a fully protonated microcrystalline protein spinning at 111 kHz, with as little as 0.5 mg protein sample. We find that amide signals have a low chance of ambiguous linkage, which is further improved by linking in both forward and backward directions. The spectra obtained are amenable to automated resonance assignment using general-purpose software such as UNIO-MATCH.

摘要

在此,我们介绍一种用于共振归属的新脉冲序列,该序列通过在单个无对角线谱中直接关联连续的酰胺共振,将序列连接所需的数据集数量减半。该方法在以60 kHz和111 kHz旋转的微晶和沉积氘代蛋白以及以111 kHz旋转的完全质子化微晶蛋白上得到了验证,蛋白样品量低至0.5 mg。我们发现酰胺信号出现模糊连接的可能性较低,通过向前和向后两个方向进行连接可进一步改善这种情况。所获得的谱图适合使用通用软件(如UNIO-MATCH)进行自动共振归属。

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