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在生长素-乙烯-细胞分裂素相互作用背景下对生长素模式进行建模的一些基本方面。

Some fundamental aspects of modeling auxin patterning in the context of auxin-ethylene-cytokinin crosstalk.

作者信息

Moore Simon, Zhang Xiaoxian, Liu Junli, Lindsey Keith

机构信息

a The Integrative Cell Biology Laboratory, School of Biological and Biomedical Sciences, Durham University ; Durham , UK.

b School of Engineering, The University of Liverpool ; Liverpool , UK.

出版信息

Plant Signal Behav. 2015;10(10):e1056424. doi: 10.1080/15592324.2015.1056424. Epub 2015 Aug 3.

DOI:10.1080/15592324.2015.1056424
PMID:26237293
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4883870/
Abstract

The activities of hormones in the Arabidopsis root depend on cellular context and exhibit either synergistic or antagonistic interactions. Patterning in Arabidopsis root development is coordinated via a localized auxin concentration maximum in the root tip, mediating transcription of key regulatory genes. Auxin concentration and response are each regulated by diverse interacting hormones and gene expression and therefore cannot change independently of those hormones and genes. For example, experimental data accumulated over many years have shown that both ethylene and cytokinin regulate auxin concentration and response. Using the crosstalk of auxin-ethylene-cytokinin as a paradigm, we discuss the links between experimental data, reaction kinetics and spatiotemporal modeling to dissect hormonal crosstalk. In particular, we discuss how kinetic equations for modeling auxin concentration are formulated based on experimental data and also the underlying assumptions for deriving those kinetic equations. Furthermore, we show that, by integrating kinetic equations with spatial root structure, modeling of spatiotemporal hormonal crosstalk is a powerful tool for analyzing and predicting the roles of multiple hormone interactions in auxin patterning. Finally, we summarize important considerations in developing a spatiotemporal hormonal crosstalk model for plant root development.

摘要

激素在拟南芥根中的活性取决于细胞环境,并表现出协同或拮抗相互作用。拟南芥根发育过程中的模式形成是通过根尖局部生长素浓度最大值来协调的,该最大值介导关键调控基因的转录。生长素浓度和反应分别受多种相互作用的激素以及基因表达的调控,因此不能独立于这些激素和基因而发生变化。例如,多年积累的实验数据表明,乙烯和细胞分裂素都能调节生长素浓度和反应。以生长素 - 乙烯 - 细胞分裂素的相互作用为范例,我们讨论实验数据、反应动力学和时空建模之间的联系,以剖析激素间的相互作用。特别是,我们讨论如何根据实验数据制定生长素浓度建模的动力学方程,以及推导这些动力学方程的潜在假设。此外,我们表明,通过将动力学方程与根的空间结构相结合,时空激素相互作用建模是分析和预测多种激素相互作用在生长素模式形成中作用的有力工具。最后,我们总结了为植物根发育建立时空激素相互作用模型时的重要考虑因素。

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本文引用的文献

1
Spatiotemporal modelling of hormonal crosstalk explains the level and patterning of hormones and gene expression in Arabidopsis thaliana wild-type and mutant roots.激素相互作用的时空模型解释了拟南芥野生型和突变体根中激素水平及基因表达模式。
New Phytol. 2015 Sep;207(4):1110-22. doi: 10.1111/nph.13421. Epub 2015 Apr 23.
2
Dissecting the regulation of pollen tube growth by modeling the interplay of hydrodynamics, cell wall and ion dynamics.通过对流体动力学、细胞壁和离子动力学之间相互作用进行建模来剖析花粉管生长的调控机制。
Front Plant Sci. 2014 Aug 11;5:392. doi: 10.3389/fpls.2014.00392. eCollection 2014.
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Plant development. Integration of growth and patterning during vascular tissue formation in Arabidopsis.植物发育。拟南芥维管束组织形成过程中生长与模式形成的整合。
Science. 2014 Aug 8;345(6197):1255215. doi: 10.1126/science.1255215.
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Kinetic models in industrial biotechnology - Improving cell factory performance.工业生物技术中的动力学模型——提升细胞工厂性能
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Hormonal crosstalk for root development: a combined experimental and modeling perspective.激素串扰在根系发育中的作用:综合实验与模型的观点。
Front Plant Sci. 2014 Mar 27;5:116. doi: 10.3389/fpls.2014.00116. eCollection 2014.
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Systems analysis of auxin transport in the Arabidopsis root apex.拟南芥根尖生长素运输的系统分析
Plant Cell. 2014 Mar;26(3):862-75. doi: 10.1105/tpc.113.119495. Epub 2014 Mar 14.
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The shifting paradigms of auxin biosynthesis.生长素生物合成的范式转变。
Trends Plant Sci. 2014 Jan;19(1):44-51. doi: 10.1016/j.tplants.2013.09.012.
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Biochem Soc Trans. 2014 Feb;42(1):219-23. doi: 10.1042/BST20130090.
9
Interaction of PLS and PIN and hormonal crosstalk in Arabidopsis root development.PLS 和 PIN 相互作用以及激素串扰在拟南芥根发育中的作用。
Front Plant Sci. 2013 Apr 5;4:75. doi: 10.3389/fpls.2013.00075. eCollection 2013.
10
Hormone symphony during root growth and development.激素在根系生长发育过程中的协同作用。
Dev Dyn. 2012 Dec;241(12):1867-85. doi: 10.1002/dvdy.23878. Epub 2012 Oct 25.