Krizova Lenka, Maixnerova Martina, Sedo Ondrej, Nemec Alexandr
Laboratory of Bacterial Genetics, National Institute of Public Health, Šrobárova 48, 100 42 Prague, Czech Republic.
Research Group Proteomics, Central European Institute of Technology and National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic.
Int J Syst Evol Microbiol. 2015 Nov;65(11):3905-3912. doi: 10.1099/ijsem.0.000511. Epub 2015 Aug 5.
We have studied the taxonomic position of a phenetically unique group of eight strains of the genus which were isolated from soil and water samples collected in protected landscape areas in the Czech Republic. Each of the comparative sequence analyses of the 16S rRNA, and genes showed that the eight strains formed a cohesive and tight cluster (intracluster sequence identities of ≥ 99.9 %, ≥ 98.5 % and ≥ 97.7 %, respectively), which was clearly separated from all hitherto known species of the genus ( ≤ 98.6 %, ≤ 84.5 % and ≤ 89.3 %, respectively). Congruent with these findings were the results of comparative sequence analysis of three additional housekeeping genes (, and ). This genotypic distinctness was mirrored by the uniqueness of the combination of a number of independent phenotypic markers including the whole-cell spectra produced by matrix-assisted laser desorption ionization time-of-flight (MALDI-ToF) MS and physiological and metabolic features. The most useful phenotypic features to differentiate the eight strains from all known species of the genus were the ability to assimilate tricarballylate and the inability to grow at 35 °C or to assimilate ethanol or l-histidine. We conclude that the eight strains represent a novel environmental species for which the name sp. nov. is proposed. The type strain is ANC 4874 ( = CCUG 67281 = CCM 8611).
我们研究了从捷克共和国受保护景观区域采集的土壤和水样中分离出的属于该属的一组八个表型独特菌株的分类地位。对16S rRNA、[此处原文缺失基因名称]和[此处原文缺失基因名称]基因的每项比较序列分析均表明,这八个菌株形成了一个紧密且连贯的簇(簇内序列同一性分别≥99.9%、≥98.5%和≥97.7%),该簇与该属所有迄今已知的物种明显分开(分别≤98.6%、≤84.5%和≤89.3%)。另外三个管家基因([此处原文缺失基因名称]、[此处原文缺失基因名称]和[此处原文缺失基因名称])的比较序列分析结果与这些发现一致。这种基因型的独特性反映在许多独立表型标记组合的独特性上,包括基质辅助激光解吸电离飞行时间(MALDI-ToF)质谱产生的全细胞光谱以及生理和代谢特征。将这八个菌株与该属所有已知物种区分开来的最有用的表型特征是同化三羧甲基丙烷的能力以及在35°C下不能生长或不能同化乙醇或L-组氨酸。我们得出结论,这八个菌株代表一个新的环境物种,为此提出名称[此处原文缺失物种名称] sp. nov.。模式菌株是ANC 4874(=CCUG 67281 = CCM 8611)。