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塑造基因组:环、结构域和区室的形成。

Getting the genome in shape: the formation of loops, domains and compartments.

作者信息

Bouwman Britta A M, de Laat Wouter

机构信息

Hubrecht Institute - KNAW and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands.

出版信息

Genome Biol. 2015 Aug 10;16(1):154. doi: 10.1186/s13059-015-0730-1.

DOI:10.1186/s13059-015-0730-1
PMID:26257189
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4536798/
Abstract

The hierarchical levels of genome architecture exert transcriptional control by tuning the accessibility and proximity of genes and regulatory elements. Here, we review current insights into the trans-acting factors that enable the genome to flexibly adopt different functionally relevant conformations.

摘要

基因组架构的层次水平通过调节基因和调控元件的可及性与接近程度来施加转录控制。在此,我们综述了目前对于使基因组能够灵活采用不同功能相关构象的反式作用因子的见解。

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Characterization and dynamics of pericentromere-associated domains in mice.小鼠中着丝粒周围相关结构域的特征与动态变化
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Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain.
Genome Res. 2025 May 2;35(5):1179-1193. doi: 10.1101/gr.279930.124.
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Targeted transcriptional downregulation of MYC using epigenomic controllers demonstrates antitumor activity in hepatocellular carcinoma models.使用表观基因组调控因子对MYC进行靶向转录下调在肝细胞癌模型中显示出抗肿瘤活性。
Nat Commun. 2024 Sep 16;15(1):7875. doi: 10.1038/s41467-024-52202-y.
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The shape of chromatin: insights from computational recognition of geometric patterns in Hi-C data.染色质的形态:Hi-C 数据中几何模式的计算识别带来的新见解。
Brief Bioinform. 2023 Sep 20;24(5). doi: 10.1093/bib/bbad302.
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Transcriptional Stress Memory and Transgenerational Inheritance of Drought Tolerance in Plants.植物转录应激记忆与耐旱性的跨代遗传
Int J Mol Sci. 2022 Oct 26;23(21):12918. doi: 10.3390/ijms232112918.
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Chromosoma. 2022 Dec;131(4):207-223. doi: 10.1007/s00412-022-00780-5. Epub 2022 Aug 29.
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Enhancer-gene specificity in development and disease.增强子-基因在发育和疾病中的特异性。
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J Thromb Haemost. 2022 Aug;20(8):1759-1765. doi: 10.1111/jth.15754. Epub 2022 May 23.
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