Koripella Ravi Kiran, Holm Mikael, Dourado Daniel, Mandava Chandra Sekhar, Flores Samuel, Sanyal Suparna
Department of Cell and Molecular Biology, Uppsala University, Box-596, BMC, 75124, Uppsala, Sweden.
Sci Rep. 2015 Aug 12;5:12970. doi: 10.1038/srep12970.
Elongation factor G (EF-G), a translational GTPase responsible for tRNA-mRNA translocation possesses a conserved histidine (H91 in Escherichia coli) at the apex of switch-II, which has been implicated in GTPase activation and GTP hydrolysis. While H91A, H91R and H91E mutants showed different degrees of defect in ribosome associated GTP hydrolysis, H91Q behaved like the WT. However, all these mutants, including H91Q, are much more defective in inorganic phosphate (Pi) release, thereby suggesting that H91 facilitates Pi release. In crystal structures of the ribosome bound EF-G•GTP a tight coupling between H91 and the γ-phosphate of GTP can be seen. Following GTP hydrolysis, H91 flips ~140° in the opposite direction, probably with Pi still coupled to it. This, we suggest, promotes Pi to detach from GDP and reach the inter-domain space of EF-G, which constitutes an exit path for the Pi. Molecular dynamics simulations are consistent with this hypothesis and demonstrate a vital role of an Mg(2+) ion in the process.
延伸因子G(EF-G)是一种负责tRNA-mRNA易位的翻译GTP酶,在开关-II的顶端有一个保守的组氨酸(大肠杆菌中为H91),它与GTP酶激活和GTP水解有关。虽然H91A、H91R和H91E突变体在核糖体相关的GTP水解中表现出不同程度的缺陷,但H91Q的表现与野生型相似。然而,包括H91Q在内的所有这些突变体在无机磷酸盐(Pi)释放方面都有更严重的缺陷,从而表明H91促进Pi释放。在核糖体结合的EF-G•GTP的晶体结构中,可以看到H91与GTP的γ-磷酸之间存在紧密耦合。GTP水解后,H91向相反方向翻转约140°,可能此时Pi仍与它相连。我们认为,这促使Pi从GDP上脱离并到达EF-G的结构域间空间,这构成了Pi的一条出口路径。分子动力学模拟与这一假设一致,并证明了Mg(2+)离子在该过程中的重要作用。