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五种界定寄生蜂(膜翅目,姬蜂科)多样性属——奥菲昂属(Fabricius)物种方法的比较

Comparison of five methods for delimitating species in Ophion Fabricius, a diverse genus of parasitoid wasps (Hymenoptera, Ichneumonidae).

作者信息

Schwarzfeld Marla D, Sperling Felix A H

机构信息

Department of Biological Sciences, CW 405 Biological Sciences Building, University of Alberta, Edmonton, Alberta T6G 2E9, Canada.

Department of Biological Sciences, CW 405 Biological Sciences Building, University of Alberta, Edmonton, Alberta T6G 2E9, Canada.

出版信息

Mol Phylogenet Evol. 2015 Dec;93:234-48. doi: 10.1016/j.ympev.2015.08.003. Epub 2015 Aug 8.

Abstract

DNA taxonomy has been proposed as a method to quickly assess diversity and species limits in highly diverse, understudied taxa. Here we use five methods for species delimitation and two genetic markers (COI and ITS2) to assess species diversity within the parasitoid genus, Ophion. We searched for compensatory base changes (CBC's) in ITS2, and determined that they are too rare to be of practical use in delimiting species in this genus. The other four methods used both COI and ITS2, and included distance-based (threshold analysis and ABGD) and tree-based (GMYC and PTP) models. We compared the results of these analyses to each other under various parameters and tested their performance with respect to 11 Nearctic species/morphospecies and 15 described Palearctic species. We also computed barcode accumulation curves of COI sequences to assess the completeness of sampling. The species count was highly variable depending on the method and parameters used, ranging from 47 to 168 species, with more conservative estimates of 89-121 species. Despite this range, many of the Nearctic test species were fairly robust with respect to method. We concluded that while there was often good congruence between methods, GMYC and PTP were less reliant on arbitrary parameters than the other two methods and more easily applied to genetic markers other than COI. However, PTP was less successful at delimiting test species than was GMYC. All methods, as well as the barcode accumulation curves, indicate that several Palearctic species remain undescribed and that we have scarcely begun to appreciate the Nearctic diversity within this genus.

摘要

DNA分类学已被提议作为一种在高度多样化且研究不足的分类群中快速评估多样性和物种界限的方法。在此,我们使用五种物种界定方法和两个遗传标记(COI和ITS2)来评估寄生蜂类Ophion属内的物种多样性。我们在ITS2中搜索了补偿性碱基变化(CBC),并确定它们过于罕见,在界定该属物种时不具有实际用途。其他四种方法同时使用了COI和ITS2,包括基于距离的(阈值分析和ABGD)和基于树的(GMYC和PTP)模型。我们在各种参数下相互比较了这些分析的结果,并针对11个新北区物种/形态种和15个已描述的古北区物种测试了它们的性能。我们还计算了COI序列的条形码积累曲线,以评估采样的完整性。物种数量根据所使用的方法和参数有很大差异,范围从47种到168种,较为保守的估计为89 - 121种。尽管有这个范围,但许多新北区测试物种在方法方面相当稳健。我们得出结论,虽然方法之间通常有很好的一致性,但GMYC和PTP比其他两种方法对任意参数的依赖较小,并且更容易应用于COI以外的遗传标记。然而,PTP在界定测试物种方面不如GMYC成功。所有方法以及条形码积累曲线都表明,有几个古北区物种尚未被描述,而且我们几乎尚未开始了解该属内新北区的多样性。

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