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基于内转录间隔区系统发育的桑属八种桑树的定义

Definition of Eight Mulberry Species in the Genus Morus by Internal Transcribed Spacer-Based Phylogeny.

作者信息

Zeng Qiwei, Chen Hongyu, Zhang Chao, Han Minjing, Li Tian, Qi Xiwu, Xiang Zhonghuai, He Ningjia

机构信息

State Key Laboratory of Silkworm Genome Biology, Institute of Sericulture and Systems Biology, Southwest University, 216 Tiansheng Road, Beibei District, Chongqing, 400716, China.

出版信息

PLoS One. 2015 Aug 12;10(8):e0135411. doi: 10.1371/journal.pone.0135411. eCollection 2015.

Abstract

Mulberry, belonging to the order Rosales, family Moraceae, and genus Morus, has received attention because of both its economic and medicinal value, as well as for its important ecological function. The genus Morus has a worldwide distribution, however, its taxonomy remains complex and disputed. Many studies have attempted to classify Morus species, resulting in varied numbers of designated Morus spp. To address this issue, we used information from internal transcribed spacer (ITS) genetic sequences to study the taxonomy of all the members of generally accepted genus Morus. We found that intraspecific 5.8S rRNA sequences were identical but that interspecific 5.8S sequences were diverse. M. alba and M. notabilis showed the shortest (215 bp) and the longest (233 bp) ITS1 sequence length, respectively. With the completion of the mulberry genome, we could identify single nucleotide polymorphisms within the ITS locus in the M. notabilis genome. From reconstruction of a phylogenetic tree based on the complete ITS data, we propose that the Morus genus should be classified into eight species, including M. alba, M. nigra, M. notabilis, M. serrata, M. celtidifolia, M. insignis, M. rubra, and M. mesozygia. Furthermore, the classification of the ITS sequences of known interspecific hybrid clones into both paternal and maternal clades indicated that ITS variation was sufficient to distinguish interspecific hybrids in the genus Morus.

摘要

桑属植物属于蔷薇目、桑科,其分类学一直存在复杂性和争议。许多研究尝试对桑属物种进行分类,导致指定的桑属物种数量各不相同。为了解决这个问题,我们利用来自内部转录间隔区(ITS)遗传序列的信息来研究公认的桑属所有成员的分类学。我们发现种内5.8S rRNA序列相同,但种间5.8S序列不同。白桑和华桑的ITS1序列长度分别最短(215 bp)和最长(233 bp)。随着桑属植物基因组的完成,我们可以在华桑基因组的ITS基因座内鉴定单核苷酸多态性。根据完整的ITS数据重建系统发育树,我们建议将桑属分为八个物种,包括白桑、黑桑、华桑、锯齿桑、柘叶桑、印度桑、红桑和中桑。此外,将已知种间杂交克隆的ITS序列分类到父本和母本分支中表明,ITS变异足以区分桑属中的种间杂种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8014/4534381/8e99c7db74c2/pone.0135411.g001.jpg

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