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鲑鱼虱水通道蛋白的系统基因组学和功能分析揭示了节肢动物中超家族的分子多样性。

Phylogenomic and functional analyses of salmon lice aquaporins uncover the molecular diversity of the superfamily in Arthropoda.

作者信息

Stavang Jon Anders, Chauvigné Francois, Kongshaug Heidi, Cerdà Joan, Nilsen Frank, Finn Roderick Nigel

机构信息

Sea Lice Research Centre, Department of Biology, Bergen High Technology Centre, University of Bergen, 5020, Bergen, Norway.

Institut de Recerca i Tecnologia Agroalimentàries (IRTA)-Institut de Ciències del Mar, Consejo Superior de Investigaciones Científicas (CSIC), 08003, Barcelona, Spain.

出版信息

BMC Genomics. 2015 Aug 19;16(1):618. doi: 10.1186/s12864-015-1814-8.

Abstract

BACKGROUND

An emerging field in biomedical research is focusing on the roles of aquaporin water channels in parasites that cause debilitating or lethal diseases to their vertebrate hosts. The primary vectorial agents are hematophagous arthropods, including mosquitoes, flies, ticks and lice, however very little is known concerning the functional diversity of aquaporins in non-insect members of the Arthropoda. Here we conducted phylogenomic and functional analyses of aquaporins in the salmon louse, a marine ectoparasitic copepod that feeds on the skin and body fluids of salmonids, and used the primary structures of the isolated channels to uncover the genomic repertoires in Arthropoda.

RESULTS

Genomic screening identified 7 aquaporin paralogs in the louse in contrast to 42 in its host the Atlantic salmon. Phylogenetic inference of the louse nucleotides and proteins in relation to orthologs identified in Chelicerata, Myriapoda, Crustacea and Hexapoda revealed that the arthropod aquaporin superfamily can be classified into three major grades (1) classical aquaporins including Big brain (Bib) and Prip-like (PripL) channels (2) aquaglyceroporins (Glp) and (3) unorthodox aquaporins (Aqp12-like). In Hexapoda, two additional subfamilies exist as Drip and a recently classified entomoglyceroporin (Eglp) group. Cloning and remapping the louse cDNAs to the genomic DNA revealed that they are encoded by 1-7 exons, with two of the Glps being expressed as N-terminal splice variants (Glp1_v1, -1_v2, -3_v1, -3_v2). Heterologous expression of the cRNAs in amphibian oocytes demonstrated that PripL transports water and urea, while Bib does not. Glp1_v1, -2, -3_v1 and -3_v2 each transport water, glycerol and urea, while Glp1_v2 and the Aqp12-like channels were retained intracellularly. Transcript abundance analyses revealed expression of each louse paralog at all developmental stages, except for glp1_v1, which is specific to preadult and adult males.

CONCLUSIONS

Our data suggest that the aquaporin repertoires of extant arthropods have expanded independently in the different lineages, but can be phylogenetically classified into three major grades as opposed to four present in deuterostome animals. While the aquaporin repertoire of Atlantic salmon represents a 6-fold redundancy compared to the louse, the functional assays reveal that the permeation properties of the different crustacean grades of aquaporin are largely conserved to the vertebrate counterparts.

摘要

背景

生物医学研究中的一个新兴领域聚焦于水通道蛋白水通道在对其脊椎动物宿主造成衰弱或致命疾病的寄生虫中的作用。主要的传播媒介是吸血节肢动物,包括蚊子、苍蝇、蜱和虱子,然而对于节肢动物非昆虫成员中水通道蛋白的功能多样性知之甚少。在此,我们对鲑鱼虱中的水通道蛋白进行了系统基因组学和功能分析,鲑鱼虱是一种海洋外寄生桡足类动物,以鲑科鱼类的皮肤和体液为食,并利用分离通道的一级结构来揭示节肢动物中的基因组库。

结果

基因组筛选在虱子中鉴定出7个水通道蛋白旁系同源物,而在其宿主大西洋鲑中为42个。将虱子的核苷酸和蛋白质与在螯肢亚门、多足亚门、甲壳亚门和六足亚门中鉴定出的直系同源物进行系统发育推断,结果表明节肢动物水通道蛋白超家族可分为三个主要类别:(1)经典水通道蛋白,包括大脑袋(Bib)和类Prip(PripL)通道;(2)水甘油通道蛋白(Glp);(3)非正统水通道蛋白(类Aqp12)。在六足亚门中,还存在另外两个亚家族,即Drip和最近分类的昆虫甘油通道蛋白(Eglp)组。将虱子的cDNA克隆并重新映射到基因组DNA上,发现它们由1 - 7个外显子编码,其中两个Glp以N端剪接变体(Glp1_v1、-1_v2、-3_v1、-3_v2)的形式表达。在两栖动物卵母细胞中对cRNA进行异源表达表明,PripL运输水和尿素,而Bib不运输。Glp1_v1、-2、-3_v1和-3_v2各自运输水、甘油和尿素,而Glp1_v2和类Aqp12通道保留在细胞内。转录本丰度分析显示,除了glp1_v1(其特异性存在于未成熟和成年雄性中)外,每个虱子旁系同源物在所有发育阶段均有表达。

结论

我们的数据表明,现存节肢动物的水通道蛋白库在不同谱系中独立扩展,但在系统发育上可分为三个主要类别,与后口动物中的四个类别不同。虽然与虱子相比,大西洋鲑的水通道蛋白库有6倍的冗余,但功能分析表明,不同甲壳类水通道蛋白类别的渗透特性在很大程度上与脊椎动物对应物保守。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7098/4539701/a20e329f5d78/12864_2015_1814_Fig1_HTML.jpg

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