National Renewable Energy Laboratory, National Bioenergy Center, Golden, CO, USA.
Department of Chemistry and Biochemistry and BioFrontiers Institute, University of Colorado, Boulder, CO, USA.
FEBS J. 2015 Nov;282(22):4341-56. doi: 10.1111/febs.13500. Epub 2015 Sep 21.
Family 1 carbohydrate-binding modules (CBMs) are ubiquitous components of multimodular fungal enzymes that degrade plant cell wall polysaccharides and bind specifically to cellulose. Native glycosylation of family 1 CBMs has been shown to substantially impact multiple physical properties, including thermal and proteolytic stability and cellulose binding affinity. To gain molecular insights into the changes in CBM properties upon glycosylation, solution structures of two glycoforms of a Trichoderma reesei family 1 CBM were studied by NMR spectroscopy: a glycosylated family 1 CBM with a mannose group attached to both Thr1 and Ser3 and a second family 1 CBM with single mannose groups attached to Thr1, Ser3 and Ser14. The structures clearly reveal that monosaccharides at both Ser3 and Ser14 on family 1 CBMs present additional cellulose binding platforms, similar to well-characterized aromatic residues at the binding interface, which align to the cellulose surface. These results are in agreement with previous experimental work demonstrating that glycans at Ser3 and Ser14 impart significant improvements in binding affinity. Additionally, detailed analysis of the NMR structures and molecular simulations indicates that the protein backbone of the CBM is not significantly altered by attachment of monosaccharides, and that the mannose attached to Ser14 may be more flexible than the mannose at Ser3. Overall, the present study reveals how family 1 CBM structures are affected by covalent attachment of monosaccharides, which are likely important post-translational modifications of these common subdomains of fungal plant cell wall degrading enzymes.
Structural data have been deposited in the RCSB Protein Data Bank (PDB codes: 2MWJ and 2MWK) and the BioMagRes Bank (BMRB codes: 25331 and 25332) for CBM_M2 and CBM_M3, respectively.
家族 1 碳水化合物结合模块 (CBM) 是多模块真菌酶中普遍存在的成分,这些酶可降解植物细胞壁多糖,并特异性结合纤维素。已证明家族 1 CBM 的天然糖基化会极大地影响多种物理性质,包括热稳定性和蛋白水解稳定性以及纤维素结合亲和力。为了深入了解糖基化对 CBM 性质的影响,通过 NMR 光谱研究了两种木霉内切葡聚糖酶家族 1 CBM 的糖基化形式的溶液结构:一种是甘露糖基分别连接到 Thr1 和 Ser3 的糖基化家族 1 CBM,另一种是 Thr1、Ser3 和 Ser14 上连接单个甘露糖基的第二个家族 1 CBM。这些结构清楚地表明,家族 1 CBM 上的 Ser3 和 Ser14 上的单糖提供了额外的纤维素结合平台,类似于结合界面上经过充分表征的芳香残基,这些残基与纤维素表面对齐。这些结果与先前的实验工作一致,表明 Ser3 和 Ser14 上的聚糖赋予了结合亲和力的显著提高。此外,对 NMR 结构和分子模拟的详细分析表明,CBM 的蛋白质骨架在单糖连接时不会发生明显改变,并且连接到 Ser14 的甘露糖可能比连接到 Ser3 的甘露糖更灵活。总体而言,本研究揭示了家族 1 CBM 结构如何受到单糖共价连接的影响,这些单糖连接可能是这些真菌植物细胞壁降解酶常见亚结构域的重要翻译后修饰。
结构数据已分别存储在 RCSB 蛋白质数据银行(PDB 代码:2MWJ 和 2MWK)和 BioMagRes 银行(BMRB 代码:25331 和 25332)中,用于 CBM_M2 和 CBM_M3。