Yang Jiang-Ke, Xiong Wei, Chen Fang-Yuan, Xu Li, Han Zheng-Gang
College of Biology and Pharmaceutical Engineering, Wuhan Polytechnic University, Wuhan, China.
PLoS One. 2017 May 5;12(5):e0176444. doi: 10.1371/journal.pone.0176444. eCollection 2017.
The cellulose binding domain (CBD) of cellulase binding to cellulosic materials is the initiation of a synergistic action on the enzymatic hydrolysis of the most abundant renewable biomass resources in nature. The binding of the CBD domain to cellulosic substrates generally relies on the interaction between the aromatic amino acids structurally located on the flat face of the CBD domain and the glucose rings of cellulose. In this study, we found the CBD domain of a newly cloned Penicillium crustosum endoglucanase EGL1, which was phylogenetically related to Aspergillus, Fusarium and Rhizopus, and divergent from the well-characterized Trichoderma reeseis cellulase CBD domain, contain two conserved aromatic amino acid-rich regions, Y451-Y452 and Y477-Y478-Y479, among which three amino acids Y451, Y477, and Y478 structurally sited on a flat face of this domain. Cellulose binding assays with green fluorescence protein as the marker, adsorption isotherm assays and an isothermal titration calorimetry assays revealed that although these three amino acids participated in this process, the Y451-Y452 appears to contribute more to the cellulose binding than Y477-Y478-Y479. Further glycine scanning mutagenesis and structural modelling revealed that the binding between CBD domain and cellulosic materials might be multi-amino-acids that participated in this process. The flexible poly-glucose molecule could contact Y451, Y477, and Y478 which form the contacting flat face of CBD domain as the typical model, some other amino acids in or outside the flat face might also participate in the interaction. Thus, it is possible that the conserved Y451-Y452 of CBD might have a higher chance of contacting the cellulosic substrates, contributing more to the affinity of CBD than the other amino acids.
纤维素酶的纤维素结合结构域(CBD)与纤维素材料的结合是自然界中最丰富的可再生生物质资源酶促水解协同作用的起始。CBD结构域与纤维素底物的结合通常依赖于结构上位于CBD结构域平面上的芳香族氨基酸与纤维素葡萄糖环之间的相互作用。在本研究中,我们发现新克隆的 crustosum 青霉内切葡聚糖酶EGL1的CBD结构域,其在系统发育上与曲霉属、镰刀菌属和根霉属相关,且与特征明确的里氏木霉纤维素酶CBD结构域不同,包含两个保守的富含芳香族氨基酸的区域,Y451 - Y452和Y477 - Y478 - Y479,其中三个氨基酸Y451、Y477和Y478结构上位于该结构域的平面上。以绿色荧光蛋白为标记的纤维素结合试验、吸附等温线试验和等温滴定量热试验表明,尽管这三个氨基酸参与了该过程,但Y451 - Y452似乎比Y477 - Y4