Petersen Gitte, Cuenca Argelia, Seberg Ole
Natural History Museum of Denmark, University of Copenhagen, Denmark
Natural History Museum of Denmark, University of Copenhagen, Denmark.
Genome Biol Evol. 2015 Aug 29;7(9):2520-32. doi: 10.1093/gbe/evv165.
Santalales is an order of plants consisting almost entirely of parasites. Some, such as Osyris, are facultative root parasites whereas others, such as Viscum, are obligate stem parasitic mistletoes. Here, we report the complete plastome sequences of one species of Osyris and three species of Viscum, and we investigate the evolutionary aspects of structural changes and changes in gene content in relation to parasitism. Compared with typical angiosperms plastomes, the four Santalales plastomes are all reduced in size (10-22% compared with Vitis), and they have experienced rearrangements, mostly but not exclusively in the border areas of the inverted repeats. Additionally, a number of protein-coding genes (matK, infA, ccsA, rpl33, and all 11 ndh genes) as well as two transfer RNA genes (trnG-UCC and trnV-UAC) have been pseudogenized or completely lost. Most of the remaining plastid genes have a significantly changed selection pattern compared with other dicots, and the relaxed selection of photosynthesis genes is noteworthy. Although gene loss obviously reduces plastome size, intergenic regions were also shortened. As plastome modifications are generally most prominent in Viscum, they are most likely correlated with the increased nutritional dependence on the host compared with Osyris.
檀香目是一类几乎完全由寄生植物组成的植物目。其中一些,如非洲檀香属,是兼性根寄生植物,而其他一些,如槲寄生属,则是专性茎寄生槲寄生。在此,我们报告了一种非洲檀香属植物和三种槲寄生属植物的完整质体基因组序列,并研究了与寄生现象相关的结构变化和基因含量变化的进化方面。与典型被子植物的质体基因组相比,这四个檀香目植物的质体基因组大小均有所减小(与葡萄相比减少了10%-22%),并且它们经历了重排,主要但并非仅发生在反向重复序列的边界区域。此外,一些蛋白质编码基因(matK、infA、ccsA、rpl33以及所有11个ndh基因)以及两个转运RNA基因(trnG-UCC和trnV-UAC)已被假基因化或完全丢失。与其他双子叶植物相比,大多数剩余的质体基因具有明显改变的选择模式,光合作用基因的选择压力松弛值得注意。虽然基因丢失明显减小了质体基因组的大小,但基因间区域也缩短了。由于质体基因组的修饰在槲寄生属中通常最为显著,它们很可能与槲寄生属相比对宿主营养依赖性的增加有关。