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黄胸鼠(鼠科)线粒体全基因组的测序与分析

Sequencing and analysis of complete mitochondrial genome of Niviventer fulvescens (Muridae).

作者信息

Yong Bin, Wei Haixue, Jia Qiang, Chen Shunde

机构信息

a College of Life Sciences, Sichuan Normal University , Chengdu , P.R. China.

出版信息

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Sep;27(5):3650-1. doi: 10.3109/19401736.2015.1079839. Epub 2015 Sep 2.

Abstract

The complete mitochondrial genome was sequenced and annotated newly from an individual of Niviventer fulvescens (Muridae) from Sichuan province. The total length of the N. fulvescens mitogenome is 16 296 bp and contains 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes and a control region, with a base composition of 34.3%A, 29.1%T, 24.2%C and 12.4%G. The nucleotide sequence data of 12 heavy-strand protein-coding genes of N. fulvescens and other 18 rodents were used for mitochondrial genome phylogenetic analyses. Bayesian phylogenetic tree demonstrated the genus Niviventer was embedded within the genus Leopoldamys, although three Niviventer species constituted a monophyletic group. More complete mitochondrial genome sequences are required to illuminate the molecular phylogenetic relationship between Niviventer and Leopoldamys.

摘要

对一只采自四川省的黄胸鼠(鼠科)个体的线粒体全基因组进行了新的测序和注释。黄胸鼠线粒体基因组全长16296 bp,包含13个蛋白质编码基因、2个核糖体RNA基因、22个转运RNA基因和一个控制区,碱基组成为34.3%A、29.1%T、24.2%C和12.4%G。利用黄胸鼠12个重链蛋白质编码基因的核苷酸序列数据以及其他18种啮齿动物的数据进行线粒体基因组系统发育分析。贝叶斯系统发育树表明,尽管三种黄胸鼠物种构成一个单系类群,但黄胸鼠属嵌套在长尾巨鼠属内。需要更多完整的线粒体基因组序列来阐明黄胸鼠属和长尾巨鼠属之间的分子系统发育关系。

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