Legendre Matthieu, Lartigue Audrey, Bertaux Lionel, Jeudy Sandra, Bartoli Julia, Lescot Magali, Alempic Jean-Marie, Ramus Claire, Bruley Christophe, Labadie Karine, Shmakova Lyubov, Rivkina Elizaveta, Couté Yohann, Abergel Chantal, Claverie Jean-Michel
Information Génomique and Structurale, Unité Mixte de Recherche 7256 (Institut de Microbiologie de la Méditerranée, FR3479) Centre National de la Recherche Scientifique, Aix-Marseille Université, 13288 Marseille Cedex 9, France;
Université Grenoble Alpes, Institut de Recherches en Technologies et Sciences pour le Vivant-Laboratoire Biologie à Grande Echelle, F-38000 Grenoble, France; Commissariat à l'Energie Atomique, Centre National de la Recherche Scientifique, Institut de Recherches en Technologies et Sciences pour le Vivant-Laboratoire Biologie à Grande Echelle, F-38000 Grenoble, France; INSERM, Laboratoire Biologie à Grande Echelle, F-38000 Grenoble, France;
Proc Natl Acad Sci U S A. 2015 Sep 22;112(38):E5327-35. doi: 10.1073/pnas.1510795112. Epub 2015 Sep 8.
Acanthamoeba species are infected by the largest known DNA viruses. These include icosahedral Mimiviruses, amphora-shaped Pandoraviruses, and Pithovirus sibericum, the latter one isolated from 30,000-y-old permafrost. Mollivirus sibericum, a fourth type of giant virus, was isolated from the same permafrost sample. Its approximately spherical virion (0.6-µm diameter) encloses a 651-kb GC-rich genome encoding 523 proteins of which 64% are ORFans; 16% have their closest homolog in Pandoraviruses and 10% in Acanthamoeba castellanii probably through horizontal gene transfer. The Mollivirus nucleocytoplasmic replication cycle was analyzed using a combination of "omic" approaches that revealed how the virus highjacks its host machinery to actively replicate. Surprisingly, the host's ribosomal proteins are packaged in the virion. Metagenomic analysis of the permafrost sample uncovered the presence of both viruses, yet in very low amount. The fact that two different viruses retain their infectivity in prehistorical permafrost layers should be of concern in a context of global warming. Giant viruses' diversity remains to be fully explored.
棘阿米巴属物种感染了已知最大的DNA病毒。这些病毒包括二十面体的米米病毒、瓮状的潘多拉病毒以及从3万年前的永久冻土中分离出的西伯利亚阔口罐病毒。西伯利亚软体病毒是第四种巨型病毒,也从同一个永久冻土样本中分离出来。其近似球形的病毒粒子(直径0.6微米)包含一个富含GC的651千碱基对基因组,编码523种蛋白质,其中64%是孤儿基因;16%在潘多拉病毒中有最接近的同源物,10%可能通过水平基因转移在卡氏棘阿米巴中存在最接近的同源物。利用多种“组学”方法组合分析了西伯利亚软体病毒的核质复制周期,揭示了该病毒如何劫持其宿主机制进行活跃复制。令人惊讶的是,宿主的核糖体蛋白被包装在病毒粒子中。对永久冻土样本的宏基因组分析发现了这两种病毒的存在,但数量非常少。在全球变暖的背景下,两种不同的病毒在史前永久冻土层中仍保持其感染力这一事实应引起关注。巨型病毒的多样性仍有待充分探索。