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宿主-病原体及其相关物种相互作用数据库及其全球分布。

Database of host-pathogen and related species interactions, and their global distribution.

机构信息

Department of Epidemiology and Population Health, Institute of Infection and Global Health, University of Liverpool , Leahurst Campus, Chester High Road, Neston, Cheshire CH64 7TE, UK.

Department of Epidemiology and Population Health, Institute of Infection and Global Health, University of Liverpool , Leahurst Campus, Chester High Road, Neston, Cheshire CH64 7TE, UK ; Institute of Biological and Environmental and Rural Sciences, Aberystwyth University , Penglais Campus, Aberystwyth SY23 3DA, UK.

出版信息

Sci Data. 2015 Sep 15;2:150049. doi: 10.1038/sdata.2015.49. eCollection 2015.

Abstract

Interactions between species, particularly where one is likely to be a pathogen of the other, as well as the geographical distribution of species, have been systematically extracted from various web-based, free-access sources, and assembled with the accompanying evidence into a single database. The database attempts to answer questions such as what are all the pathogens of a host, and what are all the hosts of a pathogen, what are all the countries where a pathogen was found, and what are all the pathogens found in a country. Two datasets were extracted from the database, focussing on species interactions and species distribution, based on evidence published between 1950-2012. The quality of their evidence was checked and verified against well-known, alternative, datasets of pathogens infecting humans, domestic animals and wild mammals. The presented datasets provide a valuable resource for researchers of infectious diseases of humans and animals, including zoonoses.

摘要

已从各种基于网络的免费资源中系统地提取了物种之间的相互作用,特别是那些可能成为另一个物种病原体的相互作用,以及物种的地理分布,并将伴随的证据一起组合到一个单独的数据库中。该数据库试图回答以下问题:宿主的所有病原体是什么,病原体的所有宿主是什么,发现病原体的所有国家是什么,以及在一个国家发现的所有病原体是什么。从该数据库中提取了两个数据集,重点关注 1950-2012 年期间发表的物种相互作用和物种分布的证据。它们的证据质量经过检查,并与知名的、替代的人类、家畜和野生哺乳动物病原体感染数据集进行了核对验证。所提供的数据集为研究人类和动物传染病(包括人畜共患病)的研究人员提供了有价值的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1184/4570150/04a46d26f663/sdata201549-f1.jpg

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