Sagarkar Sneha, Bhardwaj Pooja, Storck Veronika, Devers-Lamrani Marion, Martin-Laurent Fabrice, Kapley Atya
Environmental Genomics Division, National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440 020, India.
INRA, UMR 1347 Agroécologie, 17 rue Sully, B.P. 86510, 21065, Dijon Cedex, France.
Appl Microbiol Biotechnol. 2016 Jan;100(2):903-13. doi: 10.1007/s00253-015-6975-5. Epub 2015 Sep 25.
The Arthrobacter sp. strain AK-YN10 is an s-triazine pesticide degrading bacterium isolated from a sugarcane field in Central India with history of repeated atrazine use. AK-YN10 was shown to degrade 99 % of atrazine in 30 h from media supplemented with 1000 mg L(-1) of the herbicide. Draft genome sequencing revealed similarity to pAO1, TC1, and TC2 catabolic plasmids of the Arthrobacter taxon. Plasmid profiling analyses revealed the presence of four catabolic plasmids. The trzN, atzB, and atzC atrazine-degrading genes were located on a plasmid of approximately 113 kb.The flagellar operon found in the AK-YN10 draft genome suggests motility, an interesting trait for a bioremediation agent, and was homologous to that of Arthrobacter chlorophenolicus. The multiple s-triazines degradation property of this isolate makes it a good candidate for bioremediation of soils contaminated by s-triazine pesticides.
节杆菌属菌株AK-YN10是一种从印度中部甘蔗田分离出的s-三嗪类农药降解细菌,该甘蔗田有反复使用阿特拉津的历史。AK-YN10在30小时内可从添加了1000 mg L(-1)除草剂的培养基中降解99%的阿特拉津。基因组草图测序显示其与节杆菌属的pAO1、TC1和TC2分解代谢质粒相似。质粒图谱分析表明存在4种分解代谢质粒。trzN、atzB和atzC阿特拉津降解基因位于一个约113 kb的质粒上。在AK-YN10基因组草图中发现的鞭毛操纵子表明其具有运动性,这对于生物修复剂来说是一个有趣的特性,并且与嗜氯节杆菌的鞭毛操纵子同源。该分离株对多种s-三嗪类的降解特性使其成为受s-三嗪类农药污染土壤生物修复的良好候选菌株。