• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

重复的氨酰-tRNA合成酶的反式寡聚化在应激条件下维持遗传密码的保真度。

Trans-oligomerization of duplicated aminoacyl-tRNA synthetases maintains genetic code fidelity under stress.

作者信息

Rubio Miguel Ángel, Napolitano Mauro, Ochoa de Alda Jesús A G, Santamaría-Gómez Javier, Patterson Carl J, Foster Andrew W, Bru-Martínez Roque, Robinson Nigel J, Luque Ignacio

机构信息

Instituto de Bioquímica Vegetal y Fotosíntesis, C.S.I.C. and Universidad de Sevilla, Avda Américo Vespucio 49, E-41092 Seville, Spain.

Facultad de Formación del Profesorado. Universidad de Extremadura, Avda de la Universidad s/n. E-10003, Cáceres, Spain.

出版信息

Nucleic Acids Res. 2015 Nov 16;43(20):9905-17. doi: 10.1093/nar/gkv1020. Epub 2015 Oct 12.

DOI:10.1093/nar/gkv1020
PMID:26464444
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4787780/
Abstract

Aminoacyl-tRNA synthetases (aaRSs) play a key role in deciphering the genetic message by producing charged tRNAs and are equipped with proofreading mechanisms to ensure correct pairing of tRNAs with their cognate amino acid. Duplicated aaRSs are very frequent in Nature, with 25,913 cases observed in 26,837 genomes. The oligomeric nature of many aaRSs raises the question of how the functioning and oligomerization of duplicated enzymes is organized. We characterized this issue in a model prokaryotic organism that expresses two different threonyl-tRNA synthetases, responsible for Thr-tRNA(Thr) synthesis: one accurate and constitutively expressed (T1) and another (T2) with impaired proofreading activity that also generates mischarged Ser-tRNA(Thr). Low zinc promotes dissociation of dimeric T1 into monomers deprived of aminoacylation activity and simultaneous induction of T2, which is active for aminoacylation under low zinc. T2 either forms homodimers or heterodimerizes with T1 subunits that provide essential proofreading activity in trans. These findings evidence that in organisms with duplicated genes, cells can orchestrate the assemblage of aaRSs oligomers that meet the necessities of the cell in each situation. We propose that controlled oligomerization of duplicated aaRSs is an adaptive mechanism that can potentially be expanded to the plethora of organisms with duplicated oligomeric aaRSs.

摘要

氨酰 - tRNA合成酶(aaRSs)通过产生负载的tRNA在解读遗传信息中发挥关键作用,并配备了校对机制以确保tRNA与其同源氨基酸的正确配对。重复的aaRSs在自然界中非常常见,在26,837个基因组中观察到25,913个案例。许多aaRSs的寡聚性质引发了一个问题,即重复酶的功能和寡聚化是如何组织的。我们在一种模式原核生物中对这个问题进行了表征,该生物表达两种不同的苏氨酰 - tRNA合成酶,负责Thr - tRNA(Thr)的合成:一种准确且组成性表达(T1),另一种(T2)校对活性受损,也会产生错误负载的Ser - tRNA(Thr)。低锌促进二聚体T1解离成缺乏氨酰化活性的单体,并同时诱导T2表达,T2在低锌条件下对氨酰化有活性。T2要么形成同型二聚体,要么与提供反式必需校对活性的T1亚基形成异型二聚体。这些发现证明,在具有重复基因的生物体中,细胞可以协调aaRSs寡聚体的组装,以满足每种情况下细胞的需求。我们提出,重复aaRSs的可控寡聚化是一种适应性机制,可能会扩展到大量具有重复寡聚aaRSs的生物体中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c37/4787780/28fe16e3666b/gkv1020fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c37/4787780/bbbc58cfe4cb/gkv1020fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c37/4787780/78680c4fed3f/gkv1020fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c37/4787780/d01d4d7a19d8/gkv1020fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c37/4787780/e7bdedc22884/gkv1020fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c37/4787780/261913ea9275/gkv1020fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c37/4787780/28fe16e3666b/gkv1020fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c37/4787780/bbbc58cfe4cb/gkv1020fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c37/4787780/78680c4fed3f/gkv1020fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c37/4787780/d01d4d7a19d8/gkv1020fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c37/4787780/e7bdedc22884/gkv1020fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c37/4787780/261913ea9275/gkv1020fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5c37/4787780/28fe16e3666b/gkv1020fig6.jpg

相似文献

1
Trans-oligomerization of duplicated aminoacyl-tRNA synthetases maintains genetic code fidelity under stress.重复的氨酰-tRNA合成酶的反式寡聚化在应激条件下维持遗传密码的保真度。
Nucleic Acids Res. 2015 Nov 16;43(20):9905-17. doi: 10.1093/nar/gkv1020. Epub 2015 Oct 12.
2
Trans-editing by aminoacyl-tRNA synthetase-like editing domains.由氨酰-tRNA 合成酶样编辑结构域进行的转译后编辑。
Enzymes. 2020;48:69-115. doi: 10.1016/bs.enz.2020.07.002. Epub 2020 Sep 8.
3
A continuous assay for monitoring the synthetic and proofreading activities of multiple aminoacyl-tRNA synthetases for high-throughput drug discovery.用于高通量药物发现的多种氨酰-tRNA 合成酶的合成和校对活性的连续测定法。
RNA Biol. 2018;15(4-5):659-666. doi: 10.1080/15476286.2017.1397262. Epub 2017 Dec 15.
4
Translational fidelity maintenance preventing Ser mis-incorporation at Thr codon in protein from eukaryote.维持翻译忠实性,防止真核生物蛋白质中 Thr 密码子上 Ser 的错误掺入。
Nucleic Acids Res. 2013 Jan 7;41(1):302-14. doi: 10.1093/nar/gks982. Epub 2012 Oct 23.
5
Coordination between aminoacylation and editing to protect against proteotoxicity.氨酰化与编辑之间的协调作用以防止蛋白毒性。
Nucleic Acids Res. 2023 Oct 27;51(19):10606-10618. doi: 10.1093/nar/gkad778.
6
Synthetic and editing reactions of aminoacyl-tRNA synthetases using cognate and non-cognate amino acid substrates.氨酰-tRNA合成酶使用同源和非同源氨基酸底物的合成及编辑反应。
Methods. 2017 Jan 15;113:13-26. doi: 10.1016/j.ymeth.2016.09.015. Epub 2016 Oct 3.
7
A Human Disease-causing Point Mutation in Mitochondrial Threonyl-tRNA Synthetase Induces Both Structural and Functional Defects.线粒体苏氨酰-tRNA合成酶中的一种人类致病点突变会引发结构和功能缺陷。
J Biol Chem. 2016 Mar 18;291(12):6507-20. doi: 10.1074/jbc.M115.700849. Epub 2016 Jan 25.
8
Ancestral AlaX editing enzymes for control of genetic code fidelity are not tRNA-specific.用于控制遗传密码保真度的祖先AlaX编辑酶并非tRNA特异性的。
J Biol Chem. 2015 Apr 17;290(16):10495-503. doi: 10.1074/jbc.M115.640060. Epub 2015 Feb 27.
9
RNA-assisted catalysis in a protein enzyme: The 2'-hydroxyl of tRNA(Thr) A76 promotes aminoacylation by threonyl-tRNA synthetase.蛋白质酶中的RNA辅助催化作用:tRNA(Thr) A76的2'-羟基促进苏氨酰-tRNA合成酶的氨酰化作用。
Proc Natl Acad Sci U S A. 2008 Nov 18;105(46):17748-53. doi: 10.1073/pnas.0804247105. Epub 2008 Nov 7.
10
Loss of threonyl-tRNA synthetase-like protein Tarsl2 has little impact on protein synthesis but affects mouse development.苏氨酰-tRNA 合成酶样蛋白 Tarsl2 的缺失对蛋白质合成影响很小,但会影响小鼠的发育。
J Biol Chem. 2023 May;299(5):104704. doi: 10.1016/j.jbc.2023.104704. Epub 2023 Apr 12.

引用本文的文献

1
Adaptation of a eukaryote-like ProRS to a prokaryote-like tRNAPro.真核生物样 ProRS 适配原核生物样 tRNAPro。
Nucleic Acids Res. 2024 Jul 8;52(12):7158-7170. doi: 10.1093/nar/gkae483.
2
An ancient bacterial zinc acquisition system identified from a cyanobacterial exoproteome.从蓝藻外蛋白组中鉴定出的古老细菌锌获取系统。
PLoS Biol. 2024 Mar 11;22(3):e3002546. doi: 10.1371/journal.pbio.3002546. eCollection 2024 Mar.
3
Symmetrical distributions of aminoacyl-tRNA synthetases during the evolution of the genetic code.遗传密码进化过程中氨酰-tRNA 合成酶的对称性分布。

本文引用的文献

1
Homologous trans-editing factors with broad tRNA specificity prevent mistranslation caused by serine/threonine misactivation.具有广泛tRNA特异性的同源反式编辑因子可防止丝氨酸/苏氨酸错误激活引起的错译。
Proc Natl Acad Sci U S A. 2015 May 12;112(19):6027-32. doi: 10.1073/pnas.1423664112. Epub 2015 Apr 27.
2
Ancestral AlaX editing enzymes for control of genetic code fidelity are not tRNA-specific.用于控制遗传密码保真度的祖先AlaX编辑酶并非tRNA特异性的。
J Biol Chem. 2015 Apr 17;290(16):10495-503. doi: 10.1074/jbc.M115.640060. Epub 2015 Feb 27.
3
Evolution of oligomeric state through allosteric pathways that mimic ligand binding.
Theory Biosci. 2023 Sep;142(3):211-219. doi: 10.1007/s12064-023-00394-0. Epub 2023 Jul 5.
4
Diversification of aminoacyl-tRNA synthetase activities genomic duplication.氨酰-tRNA合成酶活性的多样化 基因组复制。
Front Physiol. 2022 Aug 19;13:983245. doi: 10.3389/fphys.2022.983245. eCollection 2022.
5
The Role of Mre Factors and Cell Division in Peptidoglycan Growth in the Multicellular Cyanobacterium .多细胞蓝藻中肽聚糖生长的 Mre 因子和细胞分裂的作用
mBio. 2022 Aug 30;13(4):e0116522. doi: 10.1128/mbio.01165-22. Epub 2022 Jul 25.
6
Protein metalation in biology.生物学中的蛋白质金属化。
Curr Opin Chem Biol. 2022 Feb;66:102095. doi: 10.1016/j.cbpa.2021.102095. Epub 2021 Nov 8.
7
Bacterial translation machinery for deliberate mistranslation of the genetic code.细菌翻译机制可故意错译遗传密码。
Proc Natl Acad Sci U S A. 2021 Aug 31;118(35). doi: 10.1073/pnas.2110797118.
8
Duplication of leucyl-tRNA synthetase in an archaeal extremophile may play a role in adaptation to variable environmental conditions.在一种古生菌极端生物中亮氨酰-tRNA 合成酶的复制可能在适应多变的环境条件中发挥作用。
J Biol Chem. 2020 Apr 3;295(14):4563-4576. doi: 10.1074/jbc.RA118.006481. Epub 2020 Feb 26.
9
A threonyl-tRNA synthetase-like protein has tRNA aminoacylation and editing activities.一种苏氨酰-tRNA 合成酶样蛋白具有 tRNA 氨酰化和编辑活性。
Nucleic Acids Res. 2018 Apr 20;46(7):3643-3656. doi: 10.1093/nar/gky211.
10
Environmental adaptation of and at genome level as seen by comparative genomic analysis.比较基因组分析揭示 与 在基因组水平上的环境适应。
Int J Biol Sci. 2018 Feb 12;14(3):306-320. doi: 10.7150/ijbs.23869. eCollection 2018.
通过模拟配体结合的变构途径实现寡聚状态的演变。
Science. 2014 Dec 19;346(6216):1254346. doi: 10.1126/science.1254346.
4
The plastid ancestor originated among one of the major cyanobacterial lineages.质体祖先起源于主要蓝细菌谱系之一。
Nat Commun. 2014 Sep 15;5:4937. doi: 10.1038/ncomms5937.
5
Human tRNA synthetase catalytic nulls with diverse functions.具有不同功能的人类 tRNA 合成酶催化缺陷型。
Science. 2014 Jul 18;345(6194):328-32. doi: 10.1126/science.1252943.
6
Zinc'ing sensibly: controlling zinc homeostasis at the transcriptional level.合理补锌:在转录水平控制锌稳态
Metallomics. 2014 Jul;6(7):1198-215. doi: 10.1039/c4mt00064a.
7
Compartmentalized cyanophycin metabolism in the diazotrophic filaments of a heterocyst-forming cyanobacterium.异形胞形成蓝藻固氮丝状体中的分隔化蓝藻素代谢。
Proc Natl Acad Sci U S A. 2014 Mar 11;111(10):3823-8. doi: 10.1073/pnas.1318564111. Epub 2014 Feb 18.
8
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
9
MAFFT: iterative refinement and additional methods.MAFFT:迭代优化及其他方法。
Methods Mol Biol. 2014;1079:131-46. doi: 10.1007/978-1-62703-646-7_8.
10
Regulation of internal promoters in a zinc-responsive operon is influenced by transcription from upstream promoters.锌应答操纵子中内部启动子的调控受上游启动子转录的影响。
J Bacteriol. 2013 Mar;195(6):1285-93. doi: 10.1128/JB.01488-12. Epub 2013 Jan 11.