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代谢组学工作台:一个用于代谢组学数据与元数据、代谢物标准品、实验方案、教程与培训以及分析工具的国际储存库。

Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools.

作者信息

Sud Manish, Fahy Eoin, Cotter Dawn, Azam Kenan, Vadivelu Ilango, Burant Charles, Edison Arthur, Fiehn Oliver, Higashi Richard, Nair K Sreekumaran, Sumner Susan, Subramaniam Shankar

机构信息

San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92037, USA.

University of Michigan, 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105, USA.

出版信息

Nucleic Acids Res. 2016 Jan 4;44(D1):D463-70. doi: 10.1093/nar/gkv1042. Epub 2015 Oct 13.

Abstract

The Metabolomics Workbench, available at www.metabolomicsworkbench.org, is a public repository for metabolomics metadata and experimental data spanning various species and experimental platforms, metabolite standards, metabolite structures, protocols, tutorials, and training material and other educational resources. It provides a computational platform to integrate, analyze, track, deposit and disseminate large volumes of heterogeneous data from a wide variety of metabolomics studies including mass spectrometry (MS) and nuclear magnetic resonance spectrometry (NMR) data spanning over 20 different species covering all the major taxonomic categories including humans and other mammals, plants, insects, invertebrates and microorganisms. Additionally, a number of protocols are provided for a range of metabolite classes, sample types, and both MS and NMR-based studies, along with a metabolite structure database. The metabolites characterized in the studies available on the Metabolomics Workbench are linked to chemical structures in the metabolite structure database to facilitate comparative analysis across studies. The Metabolomics Workbench, part of the data coordinating effort of the National Institute of Health (NIH) Common Fund's Metabolomics Program, provides data from the Common Fund's Metabolomics Resource Cores, metabolite standards, and analysis tools to the wider metabolomics community and seeks data depositions from metabolomics researchers across the world.

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b952/4702780/ab625077f06e/gkv1042fig1.jpg

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