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胡萝卜相关内生放线菌新种胡萝卜芽孢杆菌的基因组序列草图

Draft genome sequence of Paenibacillus dauci sp. nov., a carrot-associated endophytic actinobacteria.

作者信息

Wu Qian, Zhu Liying, Jiang Ling, Xu Xian, Xu Qing, Zhang Zhidong, Huang He

机构信息

College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, PR China.

College of Sciences, Nanjing Tech University, Nanjing 210009, PR China.

出版信息

Genom Data. 2015 Jun 14;5:241-53. doi: 10.1016/j.gdata.2015.06.010. eCollection 2015 Sep.

DOI:10.1016/j.gdata.2015.06.010
PMID:26484263
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4583675/
Abstract

Paenibacillus dauci sp. nov., a new kind of endophytic actinobacteria, is separated from the inner tissues of carrot sample, which forms intimated associations with carrot acting as biological control agents. Here we report a 5.37-Mb assembly of its genome sequence and other useful information, including the coding sequences (CDSs) responsible for biological processes such as antibiotic metabolic process, antimicrobial metabolism, anaerobic regulation and the biosynthesis of vitamin B and polysaccharide. This novel strain can be a potential source of novel lead products for exploitation in the field of pharmaceutical, agriculture and industry.

摘要

新种胡萝卜芽孢杆菌,一种新型内生放线菌,从胡萝卜样本的内部组织中分离得到,它与胡萝卜形成紧密关联,可作为生物防治剂。在此,我们报告了其5.37兆碱基的基因组序列组装及其他有用信息,包括负责抗生素代谢过程、抗菌代谢、厌氧调节以及维生素B和多糖生物合成等生物学过程的编码序列(CDS)。这种新菌株可能是制药、农业和工业领域开发新型先导产品的潜在来源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e784/4583675/e5abdef9aac5/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e784/4583675/f6bb039cf4f8/gr1r1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e784/4583675/0f7289516f3a/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e784/4583675/e5abdef9aac5/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e784/4583675/f6bb039cf4f8/gr1r1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e784/4583675/0f7289516f3a/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e784/4583675/e5abdef9aac5/gr3.jpg

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本文引用的文献

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Paenibacillus wulumuqiensis sp. nov. and Paenibacillus dauci sp. nov., two novel species of the genus Paenibacillus.乌鲁木齐类芽孢杆菌新种和胡萝卜类芽孢杆菌新种,类芽孢杆菌属的两个新物种。
Arch Microbiol. 2015 Apr;197(3):489-95. doi: 10.1007/s00203-014-1077-9. Epub 2015 Jan 18.
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