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冷冻电镜未来两个有前景的发展方向:捕捉短暂存在的状态以及描绘大分子的一系列连续状态。

Two promising future developments of cryo-EM: capturing short-lived states and mapping a continuum of states of a macromolecule.

作者信息

Chen Bo, Frank Joachim

机构信息

Department of Biochemistry and Molecular Biophysics, Columbia University, 650 W. 168th Street, New York, NY 10032, USA.

Department of Biochemistry and Molecular Biophysics, Columbia University, 650 W. 168th Street, New York, NY 10032, USA Department of Biological Sciences, Columbia University, New York, NY 10027, USA Howard Hughes Medical Institute, Columbia University, New York, NY 10032, USA

出版信息

Microscopy (Oxf). 2016 Feb;65(1):69-79. doi: 10.1093/jmicro/dfv344. Epub 2015 Oct 31.

Abstract

The capabilities and application range of cryogenic electron microscopy (cryo-EM) method have expanded vastly in the last two years, thanks to the advances provided by direct detection devices and computational classification tools. We take this review as an opportunity to sketch out promising developments of cryo-EM in two important directions: (i) imaging of short-lived states (10-1000 ms) of biological molecules by using time-resolved cryo-EM, particularly the mixing-spraying method and (ii) recovering an entire continuum of coexisting states from the same sample by employing a computational technique called manifold embedding. It is tempting to think of combining these two methods, to elucidate the way the states of a molecular machine such as the ribosome branch and unfold. This idea awaits further developments of both methods, particularly by increasing the data yield of the time-resolved cryo-EM method and by developing the manifold embedding technique into a user-friendly workbench.

摘要

在过去两年中,得益于直接检测设备和计算分类工具的进步,低温电子显微镜(cryo-EM)方法的能力和应用范围得到了极大扩展。我们借此综述机会勾勒出cryo-EM在两个重要方向上的有前景的发展:(i)通过使用时间分辨cryo-EM,特别是混合喷雾法,对生物分子的短寿命状态(10 - 1000毫秒)进行成像;(ii)通过采用一种称为流形嵌入的计算技术,从同一样本中恢复共存状态的整个连续统。人们很想将这两种方法结合起来,以阐明诸如核糖体等分子机器的状态分支和展开方式。这个想法有待这两种方法的进一步发展,特别是通过提高时间分辨cryo-EM方法的数据产量,以及将流形嵌入技术发展成为一个用户友好的工作平台。

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