• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

微秒级冷冻样品的融化和再结晶:蛋白质结构和束流诱导运动。

Microsecond melting and revitrification of cryo samples: protein structure and beam-induced motion.

机构信息

Laboratory of Molecular Nanodynamics, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland.

出版信息

Acta Crystallogr D Struct Biol. 2022 Jul 1;78(Pt 7):883-889. doi: 10.1107/S205979832200554X. Epub 2022 Jun 14.

DOI:10.1107/S205979832200554X
PMID:35775987
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9248841/
Abstract

A novel approach to time-resolved cryo-electron microscopy (cryo-EM) has recently been introduced that involves melting a cryo sample with a laser beam to allow protein dynamics to briefly occur in the liquid, before trapping the particles in their transient configurations by rapidly revitrifying the sample. With a time resolution of just a few microseconds, this approach is notably fast enough to study the domain motions that are typically associated with the activity of proteins but which have previously remained inaccessible. Here, crucial details are added to the characterization of the method. It is shown that single-particle reconstructions of apoferritin and Cowpea chlorotic mottle virus from revitrified samples are indistinguishable from those from conventional samples, demonstrating that melting and revitrification leaves the particles intact and that they do not undergo structural changes within the spatial resolution afforded by the instrument. How rapid revitrification affects the properties of the ice is also characterized, showing that revitrified samples exhibit comparable amounts of beam-induced motion. The results pave the way for microsecond time-resolved studies of the conformational dynamics of proteins and open up new avenues to study the vitrification process and to address beam-induced specimen movement.

摘要

一种新的时间分辨冷冻电子显微镜(cryo-EM)方法最近被引入,该方法涉及用激光束熔化冷冻样品,以使蛋白质动力学在液体中短暂发生,然后通过快速重结晶样品来捕获颗粒在其瞬态构型中。该方法的时间分辨率仅为几微秒,速度快到足以研究通常与蛋白质活性相关但以前无法访问的结构域运动。在这里,对该方法的特征进行了关键补充。结果表明,从重结晶样品中获得的脱铁蛋白和豇豆花叶病毒的单颗粒重建与传统样品没有区别,这表明融化和重结晶使颗粒保持完整,并且在仪器提供的空间分辨率内它们不会发生结构变化。还对快速重结晶如何影响冰的性质进行了表征,结果表明重结晶样品表现出相当量的束致运动。这些结果为蛋白质构象动力学的微秒时间分辨研究铺平了道路,并开辟了新的途径来研究玻璃化过程和解决束致样品运动问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/124b/9248841/8aaa0a77089c/d-78-00883-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/124b/9248841/8d6a8d3f8837/d-78-00883-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/124b/9248841/546b3cef81c5/d-78-00883-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/124b/9248841/8aaa0a77089c/d-78-00883-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/124b/9248841/8d6a8d3f8837/d-78-00883-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/124b/9248841/546b3cef81c5/d-78-00883-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/124b/9248841/8aaa0a77089c/d-78-00883-fig3.jpg

相似文献

1
Microsecond melting and revitrification of cryo samples: protein structure and beam-induced motion.微秒级冷冻样品的融化和再结晶:蛋白质结构和束流诱导运动。
Acta Crystallogr D Struct Biol. 2022 Jul 1;78(Pt 7):883-889. doi: 10.1107/S205979832200554X. Epub 2022 Jun 14.
2
Near-atomic resolution reconstructions from in situ revitrified cryo samples.原位再冷冻 cryo 样品的近原子分辨率重构。
Acta Crystallogr D Struct Biol. 2023 Jun 1;79(Pt 6):473-478. doi: 10.1107/S2059798323003431. Epub 2023 May 23.
3
Microsecond melting and revitrification of cryo samples with a correlative light-electron microscopy approach.采用相关光电子显微镜方法对冷冻样品进行微秒级熔化和再玻璃化处理。
Front Mol Biosci. 2022 Nov 10;9:1044509. doi: 10.3389/fmolb.2022.1044509. eCollection 2022.
4
Microsecond melting and revitrification of cryo samples.冷冻样品的微秒级熔化与再玻璃化
Struct Dyn. 2021 Oct 26;8(5):054302. doi: 10.1063/4.0000129. eCollection 2021 Sep.
5
Microsecond time-resolved cryo-electron microscopy.微秒时间分辨冷冻电子显微镜。
Curr Opin Struct Biol. 2024 Aug;87:102840. doi: 10.1016/j.sbi.2024.102840. Epub 2024 May 28.
6
Fast viral dynamics revealed by microsecond time-resolved cryo-EM.微秒时间分辨冷冻电镜揭示的快速病毒动力学。
Nat Commun. 2023 Sep 13;14(1):5649. doi: 10.1038/s41467-023-41444-x.
7
Movies of ice-embedded particles enhance resolution in electron cryo-microscopy.冰嵌入颗粒的电影提高了电子冷冻显微镜的分辨率。
Structure. 2012 Nov 7;20(11):1823-8. doi: 10.1016/j.str.2012.08.026. Epub 2012 Sep 27.
8
Flash melting amorphous ice.闪熔非晶冰
J Chem Phys. 2024 May 14;160(18). doi: 10.1063/5.0202948.
9
Light-coupled cryo-plunger for time-resolved cryo-EM.用于时间分辨冷冻电镜的光耦合冷冻柱塞。
J Struct Biol. 2020 Dec 1;212(3):107624. doi: 10.1016/j.jsb.2020.107624. Epub 2020 Sep 17.
10
Shaped Laser Pulses for Microsecond Time-Resolved Cryo-EM: Outrunning Crystallization during Flash Melting.用于微秒时间分辨冷冻电镜的整形激光脉冲:在快速熔化过程中超越结晶
J Phys Chem Lett. 2024 Apr 25;15(16):4244-4248. doi: 10.1021/acs.jpclett.4c00315. Epub 2024 Apr 11.

引用本文的文献

1
Advancing time-resolved structural biology: latest strategies in cryo-EM and X-ray crystallography.推进时间分辨结构生物学:冷冻电镜和X射线晶体学的最新策略。
Nat Methods. 2025 May 1. doi: 10.1038/s41592-025-02659-6.
2
Embracing Heterogeneity: Challenging the Paradigm of Replisomes as Deterministic Machines.拥抱异质性:挑战复制体作为确定性机器的范式。
Chem Rev. 2023 Dec 13;123(23):13419-13440. doi: 10.1021/acs.chemrev.3c00436. Epub 2023 Nov 16.
3
Fast viral dynamics revealed by microsecond time-resolved cryo-EM.微秒时间分辨冷冻电镜揭示的快速病毒动力学。

本文引用的文献

1
Low-cooling-rate freezing in biomolecular cryo-electron microscopy for recovery of initial frames.用于恢复初始帧的生物分子冷冻电子显微镜中的低冷却速率冷冻
QRB Discov. 2021 Sep 6;2:e11. doi: 10.1017/qrd.2021.8. eCollection 2021.
2
High-resolution single-particle cryo-EM of samples vitrified in boiling nitro-gen.在沸腾氮气中玻璃化的样品的高分辨率单颗粒冷冻电镜技术
IUCrJ. 2021 Sep 7;8(Pt 6):867-877. doi: 10.1107/S2052252521008095. eCollection 2021 Nov 1.
3
Microsecond melting and revitrification of cryo samples.冷冻样品的微秒级熔化与再玻璃化
Nat Commun. 2023 Sep 13;14(1):5649. doi: 10.1038/s41467-023-41444-x.
4
Near-atomic resolution reconstructions from in situ revitrified cryo samples.原位再冷冻 cryo 样品的近原子分辨率重构。
Acta Crystallogr D Struct Biol. 2023 Jun 1;79(Pt 6):473-478. doi: 10.1107/S2059798323003431. Epub 2023 May 23.
5
Electron diffraction of deeply supercooled water in no man's land.深过冷水中的电子衍射处于无人区。
Nat Commun. 2023 May 17;14(1):2812. doi: 10.1038/s41467-023-38520-7.
6
Frozen in time: analyzing molecular dynamics with time-resolved cryo-EM.冻结的时间:用时间分辨 cryo-EM 分析分子动力学。
Structure. 2023 Jan 5;31(1):4-19. doi: 10.1016/j.str.2022.11.014. Epub 2022 Dec 29.
7
Microsecond melting and revitrification of cryo samples with a correlative light-electron microscopy approach.采用相关光电子显微镜方法对冷冻样品进行微秒级熔化和再玻璃化处理。
Front Mol Biosci. 2022 Nov 10;9:1044509. doi: 10.3389/fmolb.2022.1044509. eCollection 2022.
Struct Dyn. 2021 Oct 26;8(5):054302. doi: 10.1063/4.0000129. eCollection 2021 Sep.
4
Below 3 Å structure of apoferritin using a multipurpose TEM with a side entry cryoholder.使用带侧插式 cryo-holder 的多用途 TEM 观察到无铁蛋白的 3Å 以下结构。
Sci Rep. 2021 Apr 16;11(1):8395. doi: 10.1038/s41598-021-87183-1.
5
Devitrification reduces beam-induced movement in cryo-EM.去玻璃化减少了冷冻电镜中电子束诱导的运动。
IUCrJ. 2021 Mar 1;8(Pt 2):186-194. doi: 10.1107/S2052252520016243.
6
CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks.CryoDRGN:使用神经网络重建异质冷冻电镜结构。
Nat Methods. 2021 Feb;18(2):176-185. doi: 10.1038/s41592-020-01049-4. Epub 2021 Feb 4.
7
Atomic-Resolution Imaging of Fast Nanoscale Dynamics with Bright Microsecond Electron Pulses.利用明亮的微秒级电子脉冲对快速纳米级动力学进行原子分辨率成像。
Nano Lett. 2021 Jan 13;21(1):612-618. doi: 10.1021/acs.nanolett.0c04184. Epub 2020 Dec 10.
8
Single-particle cryo-EM at atomic resolution.单颗粒 cryo-EM 在原子分辨率下。
Nature. 2020 Nov;587(7832):152-156. doi: 10.1038/s41586-020-2829-0. Epub 2020 Oct 21.
9
Atomic-resolution protein structure determination by cryo-EM.利用冷冻电镜技术进行原子分辨率的蛋白质结构测定。
Nature. 2020 Nov;587(7832):157-161. doi: 10.1038/s41586-020-2833-4. Epub 2020 Oct 21.
10
Characterization of a time-resolved electron microscope with a Schottky field emission gun.具有肖特基场发射枪的时间分辨电子显微镜的表征
Struct Dyn. 2020 Oct 1;7(5):054304. doi: 10.1063/4.0000034. eCollection 2020 Sep.