Foesel Bärbel U, Geppert Alicia, Rohde Manfred, Overmann Jörg
Department of Microbial Ecology and Diversity Research, Leibniz Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen, Braunschweig, Germany.
Central Facility for Microscopy, Helmholtz Centre for Infection Research, Braunschweig, Germany.
Int J Syst Evol Microbiol. 2016 Feb;66(2):652-665. doi: 10.1099/ijsem.0.000770. Epub 2015 Nov 17.
Two Gram-type-positive, non-spore-forming bacteria, strains D16/0/H6 and A22/0/F9_1, were isolated from Namibian semiarid savannah soils. 16S rRNA gene sequence analysis revealed 96.6 % identity between the two strains and placed them within the order of the class . The closest phylogenetic relatives with validly published names were several strains of the genus and the species , with pairwise sequence similarities of ≤ 94.0 %. Cells of strain D16/0/H6 were ovoid to rod-shaped, whereas strain A22/0/F9_1 formed regular rods. Cells of both strains were motile and divided by binary fission. Colonies were pink and white to pale yellowish/brownish, respectively. Strains D16/0/H6 and A22/0/F9_1 were aerobic, chemoheterotrophic mesophiles with broad temperature (13-43 and 17-43 °C, respectively) and pH (pH 4.5-8.5 and 5.0-9.5) ranges for growth. Complex proteinaceous substrates and glucose were the preferred carbon and energy sources. Strain A22/0/F9_1 also grew on various carboxylic acids. For both strains, the peptidoglycan diamino acid was -2,6-diaminopimelic acid. The major quinone was MK-8. As a minor compound, MK-7 occurred in strain D16/0/H6; strain A22/0F9_1 also contained MK-7, MK-7(H) and MK-8(H). Major fatty acids of strain D16/0/H6 were 10-methyl C, iso-C and Cω9. Strain A22/0F9_1 contained Cω9, Cω8, Cω6 and iso-C as major components. The DNA G+C contents of strains D16/0/H6 and A22/0/F9_1 were 72.8 and 74.0 mol%, respectively. Based on these characteristics, the two isolates are assigned to novel species of the new genus gen. nov., the type species sp. nov. (type strain D16/0/H6 = DSM 25205 = LMG 26950) and a second species sp. nov. (type strain A22/0/F9_1 = DSM 25204 = LMG 26949). As the novel genus and species cannot be clearly assigned to an established family within the order , the novel family fam. nov. is proposed. Emended descriptions of the classes and and their orders and families are also provided.
从纳米比亚半干旱草原土壤中分离出两株革兰氏阳性、无芽孢形成细菌,菌株D16/0/H6和A22/0/F9_1。16S rRNA基因序列分析显示这两株菌之间有96.6%的同一性,并将它们归入该类的目。具有有效发表名称的最接近系统发育亲缘种是该属的几个菌株和该种,两两序列相似性≤94.0%。菌株D16/0/H6的细胞呈卵形至杆状,而菌株A22/0/F9_1形成规则的杆状。两株菌的细胞均具运动性,通过二分分裂进行繁殖。菌落分别为粉红色和白色至浅黄色/浅褐色。菌株D16/0/H6和A22/0/F9_1是需氧、化能异养嗜温菌,生长温度范围较宽(分别为13 - 43和17 - 43°C),pH范围也较宽(pH 4.5 - 8.5和5.0 - 9.5)。复杂蛋白质底物和葡萄糖是首选的碳源和能源。菌株A22/0/F9_1也能在多种羧酸上生长。对于两株菌,肽聚糖二氨基酸均为-2,6-二氨基庚二酸。主要醌为MK-8。作为次要化合物,MK-7存在于菌株D16/0/H6中;菌株A22/0F9_1还含有MK-7、MK-7(H)和MK-8(H)。菌株D16/0/H6的主要脂肪酸为10-甲基C、异-C和Cω9。菌株A22/0F9_1以Cω9、Cω8、Cω6和异-C为主要成分。菌株D16/0/H6和A22/0/F9_1的DNA G+C含量分别为72.8和74.0 mol%。基于这些特征,这两个分离株被归入新属的新种,新属为gen. nov.,模式种为sp. nov.(模式菌株D16/0/H6 = DSM 25205 = LMG 26950)和第二个种sp. nov.(模式菌株A22/0/F9_1 = DSM 25204 = LMG 26949)。由于该新属和新种不能明确归入该目内已确立的科,因此提出新科fam. nov.。还提供了对该类及其目和科的修订描述。