Foesel Bärbel U, Mayer Susanne, Luckner Manja, Wanner Gerhard, Rohde Manfred, Overmann Jörg
Department of Biology I, Großhaderner Straße 2-4, D-82152 Martinsried, Germany.
Department of Microbial Ecology and Diversity Research, Leibniz Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen, Braunschweig, Germany.
Int J Syst Evol Microbiol. 2016 Jan;66(1):219-229. doi: 10.1099/ijsem.0.000700. Epub 2015 Oct 20.
Three Gram-negative, non-spore-forming, encapsulated bacteria were isolated from a Namibian river-bank soil (strains 277T and 307) and a semiarid savannah soil (strain A2-1cT). 16S rRNA gene sequence analyses placed them within subdivision 1 of the Acidobacteria and revealed 100 % similarity between strains 277T and 307 and 98.2 % similarity between A2-1cT and the former two strains. The closest relatives with validly published names were Telmatobacter bradus, Acidicapsa borealis and Acidicapsa ligni (94.7-95.9 % similarity to the type strains). Cells of all three strains were rod-shaped and motile and divided by binary fission. Ultrastructural analyses revealed a thick cell envelope, resulting mainly from a thick periplasmic space. Colonies of strains 277T and 307 were white to cream and light pink, respectively, while strain A2-1cT displayed a bright pink colour. All three strains were aerobic, chemoheterotrophic mesophiles with a broad temperature range for growth and a moderately acidic pH optimum. Sugars and complex proteinaceous substrates were the preferred carbon and energy sources. A few polysaccharides were degraded. The major quinone in all three strains was MK-8; MK-7 occurred in strain A2-1cT as a minor compound. Major fatty acids were iso-C15 : 0 and iso-C17 : 1ω7c. In addition, iso-C17 : 0 occurred in significant amounts. The DNA G+C contents of strains 277T, 307 and A2-1cT were 59.6, 59.9 and 58.5 mol%, respectively. Based on these characteristics, the three isolates are assigned to two novel species of the novel genus Occallatibacter gen. nov., Occallatibacter riparius sp. nov. [type strain 277T ( = DSM 25168T = LMG 26948T) and reference strain 307 ( = DSM 25169 = LMG 26947)] and Occallatibacter savannae sp. nov. [type strain A2-1cT ( = DSM 25170T = LMG 26946T)]. Together with several other recently described taxa, the novel isolates provide the basis for an emended description of the established family Acidobacteriaceae.
从纳米比亚河岸土壤(菌株277T和307)和半干旱稀树草原土壤(菌株A2-1cT)中分离出三种革兰氏阴性、不形成芽孢、有荚膜的细菌。16S rRNA基因序列分析将它们置于酸杆菌门的第1亚群内,结果显示菌株277T和307之间的相似度为100%,A2-1cT与前两个菌株之间的相似度为98.2%。已有效发表名称的最相近亲缘种是迟缓栖地杆菌、北方嗜酸菌和木质嗜酸菌(与模式菌株的相似度为94.7 - 95.9%)。所有三种菌株的细胞均为杆状且具运动性,通过二分分裂进行繁殖。超微结构分析显示有一层厚厚的细胞包膜,主要是由于周质空间较厚所致。菌株277T和307的菌落分别为白色至奶油色和浅粉色,而菌株A2-1cT呈现亮粉色。所有三种菌株均为需氧、化能异养的嗜温菌,生长温度范围较宽,最适pH为中度酸性。糖类和复杂的含蛋白质底物是首选的碳源和能源。少数多糖可被降解。所有三种菌株中的主要醌类是MK-8;MK-7在菌株A2-1cT中作为次要成分出现。主要脂肪酸为异-C15 : 0和异-C17 : 1ω7c。此外,异-C17 : 0大量存在。菌株277T、307和A2-1cT的DNA G+C含量分别为59.6、59.9和58.5摩尔%。基于这些特征,这三个分离株被归入新属Occallatibacter gen. nov.的两个新物种,即河岸Occallatibacter菌(Occallatibacter riparius sp. nov.)[模式菌株277T( = DSM 25168T = LMG 26948T)和参考菌株307( = DSM 25169 = LMG 26947)]以及稀树草原Occallatibacter菌(Occallatibacter savannae sp. nov.)[模式菌株A2-1cT( = DSM 25170T = LMG 26946T)]。这些新分离株与其他一些最近描述的分类单元一起,为修订已建立的酸杆菌科的描述提供了依据。