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河岸栖奥卡氏菌属,新属,新种及萨凡纳栖奥卡氏菌,新种,从纳米比亚土壤中分离出的酸杆菌,以及酸杆菌科的修订描述

Occallatibacter riparius gen. nov., sp. nov. and Occallatibacter savannae sp. nov., acidobacteria isolated from Namibian soils, and emended description of the family Acidobacteriaceae.

作者信息

Foesel Bärbel U, Mayer Susanne, Luckner Manja, Wanner Gerhard, Rohde Manfred, Overmann Jörg

机构信息

Department of Biology I, Großhaderner Straße 2-4, D-82152 Martinsried, Germany.

Department of Microbial Ecology and Diversity Research, Leibniz Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen, Braunschweig, Germany.

出版信息

Int J Syst Evol Microbiol. 2016 Jan;66(1):219-229. doi: 10.1099/ijsem.0.000700. Epub 2015 Oct 20.

Abstract

Three Gram-negative, non-spore-forming, encapsulated bacteria were isolated from a Namibian river-bank soil (strains 277T and 307) and a semiarid savannah soil (strain A2-1cT). 16S rRNA gene sequence analyses placed them within subdivision 1 of the Acidobacteria and revealed 100 % similarity between strains 277T and 307 and 98.2 % similarity between A2-1cT and the former two strains. The closest relatives with validly published names were Telmatobacter bradus, Acidicapsa borealis and Acidicapsa ligni (94.7-95.9 % similarity to the type strains). Cells of all three strains were rod-shaped and motile and divided by binary fission. Ultrastructural analyses revealed a thick cell envelope, resulting mainly from a thick periplasmic space. Colonies of strains 277T and 307 were white to cream and light pink, respectively, while strain A2-1cT displayed a bright pink colour. All three strains were aerobic, chemoheterotrophic mesophiles with a broad temperature range for growth and a moderately acidic pH optimum. Sugars and complex proteinaceous substrates were the preferred carbon and energy sources. A few polysaccharides were degraded. The major quinone in all three strains was MK-8; MK-7 occurred in strain A2-1cT as a minor compound. Major fatty acids were iso-C15 : 0 and iso-C17 : 1ω7c. In addition, iso-C17 : 0 occurred in significant amounts. The DNA G+C contents of strains 277T, 307 and A2-1cT were 59.6, 59.9 and 58.5 mol%, respectively. Based on these characteristics, the three isolates are assigned to two novel species of the novel genus Occallatibacter gen. nov., Occallatibacter riparius sp. nov. [type strain 277T ( = DSM 25168T = LMG 26948T) and reference strain 307 ( = DSM 25169 = LMG 26947)] and Occallatibacter savannae sp. nov. [type strain A2-1cT ( = DSM 25170T = LMG 26946T)]. Together with several other recently described taxa, the novel isolates provide the basis for an emended description of the established family Acidobacteriaceae.

摘要

从纳米比亚河岸土壤(菌株277T和307)和半干旱稀树草原土壤(菌株A2-1cT)中分离出三种革兰氏阴性、不形成芽孢、有荚膜的细菌。16S rRNA基因序列分析将它们置于酸杆菌门的第1亚群内,结果显示菌株277T和307之间的相似度为100%,A2-1cT与前两个菌株之间的相似度为98.2%。已有效发表名称的最相近亲缘种是迟缓栖地杆菌、北方嗜酸菌和木质嗜酸菌(与模式菌株的相似度为94.7 - 95.9%)。所有三种菌株的细胞均为杆状且具运动性,通过二分分裂进行繁殖。超微结构分析显示有一层厚厚的细胞包膜,主要是由于周质空间较厚所致。菌株277T和307的菌落分别为白色至奶油色和浅粉色,而菌株A2-1cT呈现亮粉色。所有三种菌株均为需氧、化能异养的嗜温菌,生长温度范围较宽,最适pH为中度酸性。糖类和复杂的含蛋白质底物是首选的碳源和能源。少数多糖可被降解。所有三种菌株中的主要醌类是MK-8;MK-7在菌株A2-1cT中作为次要成分出现。主要脂肪酸为异-C15 : 0和异-C17 : 1ω7c。此外,异-C17 : 0大量存在。菌株277T、307和A2-1cT的DNA G+C含量分别为59.6、59.9和58.5摩尔%。基于这些特征,这三个分离株被归入新属Occallatibacter gen. nov.的两个新物种,即河岸Occallatibacter菌(Occallatibacter riparius sp. nov.)[模式菌株277T( = DSM 25168T = LMG 26948T)和参考菌株307( = DSM 25169 = LMG 26947)]以及稀树草原Occallatibacter菌(Occallatibacter savannae sp. nov.)[模式菌株A2-1cT( = DSM 25170T = LMG 26946T)]。这些新分离株与其他一些最近描述的分类单元一起,为修订已建立的酸杆菌科的描述提供了依据。

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