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基于势的原子多极矩的系统改进及静电参数空间的冗余性

Systematic Improvement of Potential-Derived Atomic Multipoles and Redundancy of the Electrostatic Parameter Space.

作者信息

Jakobsen Sofie, Jensen Frank

机构信息

Department of Chemistry, Aarhus University , DK-8000 Aarhus, Denmark.

出版信息

J Chem Theory Comput. 2014 Dec 9;10(12):5493-504. doi: 10.1021/ct500803r.

DOI:10.1021/ct500803r
PMID:26583232
Abstract

We assess the accuracy of force field (FF) electrostatics at several levels of approximation from the standard model using fixed partial charges to conformational specific multipole fits including up to quadrupole moments. Potential-derived point charges and multipoles are calculated using least-squares methods for a total of ∼1000 different conformations of the 20 natural amino acids. Opposed to standard charge fitting schemes the procedure presented in the current work employs fitting points placed on a single isodensity surface, since the electrostatic potential (ESP) on such a surface determines the ESP at all points outside this surface. We find that the effect of multipoles beyond partial atomic charges is of the same magnitude as the effect due to neglecting conformational dependency (i.e., polarizability), suggesting that the two effects should be included at the same level in FF development. The redundancy at both the partial charge and multipole levels of approximation is quantified. We present an algorithm which stepwise reduces or increases the dimensionality of the charge or multipole parameter space and provides an upper limit of the ESP error that can be obtained at a given truncation level. Thereby, we can identify a reduced set of multipole moments corresponding to ∼40% of the total number of multipoles. This subset of parameters provides a significant improvement in the representation of the ESP compared to the simple point charge model and close to the accuracy obtained using the complete multipole parameter space. The selection of the ∼40% most important multipole sites is highly transferable among different conformations, and we find that quadrupoles are of high importance for atoms involved in π-bonding, since the anisotropic electric field generated in such regions requires a large degree of flexibility.

摘要

我们从标准模型出发,在几个近似水平上评估力场(FF)静电学的准确性,从使用固定部分电荷到构象特异性多极拟合,包括高达四极矩。使用最小二乘法为20种天然氨基酸的总共约1000种不同构象计算势衍生点电荷和多极。与标准电荷拟合方案不同,当前工作中提出的程序采用放置在单个等密度表面上的拟合点,因为该表面上的静电势(ESP)决定了该表面之外所有点的ESP。我们发现,除部分原子电荷之外的多极效应与因忽略构象依赖性(即极化率)而产生的效应大小相同,这表明在FF发展中应在同一水平上考虑这两种效应。对部分电荷和多极近似水平上的冗余进行了量化。我们提出了一种算法,该算法逐步降低或增加电荷或多极参数空间的维度,并提供在给定截断水平下可获得的ESP误差的上限。由此,我们可以识别出对应于多极总数约40%的一组减少的多极矩。与简单点电荷模型相比,该参数子集在ESP表示方面有显著改进,并且接近使用完整多极参数空间获得的精度。约40%最重要的多极位点的选择在不同构象之间具有高度可转移性,并且我们发现四极对于参与π键合的原子非常重要,因为在这些区域产生的各向异性电场需要很大程度的灵活性。

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