• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

最小分布电荷:以点电荷静电学为代价的多极质量。

Minimal distributed charges: Multipolar quality at the cost of point charge electrostatics.

机构信息

Department of Chemistry, University of Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland.

出版信息

J Chem Phys. 2017 Oct 28;147(16):161712. doi: 10.1063/1.4993424.

DOI:10.1063/1.4993424
PMID:29096479
Abstract

Most empirical force fields use atom-centered point charges (PCs) to represent the electrostatic potential (ESP) around molecules. While such PC models are computationally efficient, they are unable to capture anisotropic electronic features, such as σ holes or lone pairs. These features are better described using atomic multipole (MTP) moments, which significantly improve the quality of the resulting ESP. However, the improvement comes at the expense of a considerably increased computational complexity and cost for calculating the interaction energies and forces. In the present work, a novel minimal distributed charge model (MDCM) based on off-centered point charges is presented and the quality of the resulting ESP is compared to the performance of MTPs and atom-centered PC models for several test molecules. All three models are fitted using the same algorithm based on differential evolution, which is available as a Fortran90 program from the authors upon request. We show that the MDCM is capable of approximating the reference ab initio ESP with an accuracy as good as, or better than, MTPs without the need for computationally expensive higher order multipoles. Further it is demonstrated that the MDCM is numerically stable in molecular dynamics simulations and is able to reproduce electrostatic interaction energies and thermodynamic quantities with the same accuracy as MTPs at reduced computational cost.

摘要

大多数经验力场使用基于原子中心的点电荷(PCs)来表示分子周围的静电势(ESP)。虽然这种 PC 模型计算效率高,但它们无法捕捉各向异性的电子特征,如σ孔或孤对电子。这些特征使用原子多极矩(MTP)矩来描述效果更好,这显著提高了所得 ESP 的质量。然而,这种改进是以显著增加计算能量和力相互作用的计算复杂度和成本为代价的。在本工作中,提出了一种基于偏心点电荷的新型最小分布式电荷模型(MDCM),并将所得 ESP 的质量与 MTP 和基于原子中心的 PC 模型在几个测试分子上的性能进行了比较。所有三种模型都使用基于差分进化的相同算法进行拟合,该算法可根据要求以 Fortran90 程序的形式从作者处获得。我们表明,MDCM 能够以与 MTP 相同或更好的精度来近似参考从头算 ESP,而无需计算成本高的更高阶多极矩。此外,还证明 MDCM 在分子动力学模拟中是数值稳定的,并且能够以与 MTP 相同的精度再现静电相互作用能量和热力学量,同时降低计算成本。

相似文献

1
Minimal distributed charges: Multipolar quality at the cost of point charge electrostatics.最小分布电荷:以点电荷静电学为代价的多极质量。
J Chem Phys. 2017 Oct 28;147(16):161712. doi: 10.1063/1.4993424.
2
Multipole-Based Force Fields from ab Initio Interaction Energies and the Need for Jointly Refitting All Intermolecular Parameters.基于从头算相互作用能的多极子力场以及联合重新拟合所有分子间参数的必要性。
J Chem Theory Comput. 2013 Mar 12;9(3):1499-511. doi: 10.1021/ct300888f. Epub 2013 Feb 15.
3
Charge Anisotropy: Where Atomic Multipoles Matter Most.电荷各向异性:原子多极矩最为重要之处。
J Chem Theory Comput. 2014 Oct 14;10(10):4488-96. doi: 10.1021/ct5005565. Epub 2014 Sep 30.
4
Partial Atomic Charges and Screened Charge Models of the Electrostatic Potential.静电势的部分原子电荷与屏蔽电荷模型
J Chem Theory Comput. 2012 Jun 12;8(6):1989-98. doi: 10.1021/ct2009285. Epub 2012 May 7.
5
Multipolar electrostatics.多极静电学
Phys Chem Chem Phys. 2014 Jun 14;16(22):10367-87. doi: 10.1039/c3cp54829e.
6
A Novel, Computationally Efficient Multipolar Model Employing Distributed Charges for Molecular Dynamics Simulations.一种用于分子动力学模拟的、采用分布式电荷的新型高效计算多极模型。
J Chem Theory Comput. 2014 Oct 14;10(10):4229-41. doi: 10.1021/ct500511t. Epub 2014 Sep 16.
7
Molecular Dynamics with Conformationally Dependent, Distributed Charges.具有构象依赖性分布电荷的分子动力学
J Chem Theory Comput. 2022 Dec 13;18(12):7544-7554. doi: 10.1021/acs.jctc.2c00693. Epub 2022 Nov 8.
8
Polarizable Multipolar Molecular Dynamics Using Distributed Point Charges.使用分布式点电荷的极化多极分子动力学。
J Chem Theory Comput. 2020 Dec 8;16(12):7267-7280. doi: 10.1021/acs.jctc.0c00883. Epub 2020 Nov 27.
9
Atomic multipoles: electrostatic potential fit, local reference axis systems, and conformational dependence.原子多极子:静电势拟合、局部参考轴系统和构象依赖性。
J Comput Chem. 2012 Jul 30;33(20):1673-88. doi: 10.1002/jcc.22996. Epub 2012 Apr 28.
10
Atomic forces for geometry-dependent point multipole and gaussian multipole models.原子力用于几何相关的点多极子和高斯多极子模型。
J Comput Chem. 2010 Nov 30;31(15):2702-13. doi: 10.1002/jcc.21563.

引用本文的文献

1
Enhancing Empirical Energy Functions Using Physics- and Machine Learning-Based Extensions: Structure, Dynamics and Spectroscopy of Modified Benzenes.利用基于物理和机器学习的扩展增强经验能量函数:修饰苯的结构、动力学和光谱学
J Comput Chem. 2025 Aug 5;46(21):e70162. doi: 10.1002/jcc.70162.
2
CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed.CHARMM 45:可访问性、功能和速度的增强。
J Phys Chem B. 2024 Oct 17;128(41):9976-10042. doi: 10.1021/acs.jpcb.4c04100. Epub 2024 Sep 20.
3
Biomolecular dynamics with machine-learned quantum-mechanical force fields trained on diverse chemical fragments.
基于在各种化学片段上训练的机器学习量子力学力场的生物分子动力学。
Sci Adv. 2024 Apr 5;10(14):eadn4397. doi: 10.1126/sciadv.adn4397.
4
Streamlining and Optimizing Strategies of Electrostatic Parameterization.静电参数化的精简与优化策略
J Chem Theory Comput. 2023 Sep 26;19(18):6353-6365. doi: 10.1021/acs.jctc.3c00659. Epub 2023 Sep 7.
5
Hydration dynamics and IR spectroscopy of 4-fluorophenol.4-氟苯酚的水合动力学和红外光谱。
Phys Chem Chem Phys. 2022 Nov 2;24(42):26046-26060. doi: 10.1039/d2cp02857c.
6
Quantitative molecular simulations.定量分子模拟。
Phys Chem Chem Phys. 2022 Jun 1;24(21):12767-12786. doi: 10.1039/d2cp01211a.
7
Machine Learning Force Fields.机器学习力场
Chem Rev. 2021 Aug 25;121(16):10142-10186. doi: 10.1021/acs.chemrev.0c01111. Epub 2021 Mar 11.
8
Charge Anisotropy of Nitrogen: Where Chemical Intuition Fails.氮的电荷各向异性:化学直觉的失败之处。
J Chem Theory Comput. 2020 Jul 14;16(7):4443-4453. doi: 10.1021/acs.jctc.0c00204. Epub 2020 Jun 9.
9
Polarizable Force Fields for Biomolecular Simulations: Recent Advances and Applications.用于生物分子模拟的极化力场:最新进展和应用。
Annu Rev Biophys. 2019 May 6;48:371-394. doi: 10.1146/annurev-biophys-070317-033349. Epub 2019 Mar 27.
10
Ultrafast dynamics induced by the interaction of molecules with electromagnetic fields: Several quantum, semiclassical, and classical approaches.分子与电磁场相互作用所引发的超快动力学:几种量子、半经典和经典方法。
Struct Dyn. 2018 Jan 8;4(6):061509. doi: 10.1063/1.4996559. eCollection 2017 Nov.