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金属卟啉中的能量结构相关性与血红蛋白对氧结合的控制。

Energy-structure correlation in metalloporphyrins and the control of oxygen binding by hemoglobin.

作者信息

Warshel A

出版信息

Proc Natl Acad Sci U S A. 1977 May;74(5):1789-93. doi: 10.1073/pnas.74.5.1789.

Abstract

The contribution of the porphyrin skeleton to the potential energy surface metalloporphyrins is calculated by the semiempirical method of quantum mechanical extension of the consistent force field to eta electron molecules. This calculation makes it possible to correlate the observed structure of metalloporphyrins with the strain energy of the porphyrin skeleton. It is found that the out-of-plane metal displacement in pentacoordinate heme systems is due to both the restricted size of the porphyrin hole and the "1-3" steric interaction between the axial ligand and the heme nitrogens. The main components of the active site of hemoglobin are simulated by a histidine-heme-oxygen system. The energy surface of this system provides a quantitative explanation for the control of ligand binding by hemoglobin. It is shown that the heme acts as a diaphragm, designed to provide simultaneous binding to the histidine and the sixth ligand under the steric requirements of the 1-3 interactions. The dependence of the hemoglobin potential surface on the distance between the proximal histidine and the heme plane is evaluated for the R and T states, using the calculated heme potential and the observed energy of heme-heme interaction.

摘要

通过将一致力场量子力学扩展到η电子分子的半经验方法,计算了卟啉骨架对金属卟啉势能面的贡献。该计算使得将观察到的金属卟啉结构与卟啉骨架的应变能相关联成为可能。研究发现,五配位血红素体系中金属的平面外位移是由于卟啉孔尺寸受限以及轴向配体与血红素氮原子之间的“1-3”空间相互作用所致。用组氨酸-血红素-氧体系模拟了血红蛋白活性位点的主要成分。该体系的能量表面为血红蛋白对配体结合的控制提供了定量解释。结果表明,血红素起到了隔膜的作用,旨在在1-3相互作用的空间要求下同时与组氨酸和第六个配体结合。利用计算得到的血红素势能和观察到的血红素-血红素相互作用能,评估了R态和T态下血红蛋白势能面对近端组氨酸与血红素平面之间距离的依赖性。

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本文引用的文献

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Nature of haem-haem interaction.血红素-血红素相互作用的本质
Nature. 1972 Jun 30;237(5357):495-9. doi: 10.1038/237495a0.
4
Binding of imidazole and 2-methylimidazole by hemes in organic solvents. Evidence for five-coordination.
Biochem Biophys Res Commun. 1974 Apr 8;57(3):654-9. doi: 10.1016/0006-291x(74)90596-8.
8
Ferrous porphyrins in organic solvents. I. Preparation and coordinating properties.
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