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本文引用的文献

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Prehistoric genomes reveal the genetic foundation and cost of horse domestication.史前基因组揭示了马驯化的遗传基础和代价。
Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):E5661-9. doi: 10.1073/pnas.1416991111. Epub 2014 Dec 15.
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Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX.通过 SNP 检测以及基于 PALEOMIX 的系统发生基因组学和宏基因组学分析来对古代和现代基因组进行特征分析。
Nat Protoc. 2014 May;9(5):1056-82. doi: 10.1038/nprot.2014.063. Epub 2014 Apr 10.
3
TBX3 regulates splicing in vivo: a novel molecular mechanism for Ulnar-mammary syndrome.TBX3在体内调节剪接:尺骨-乳腺综合征的一种新分子机制。
PLoS Genet. 2014 Mar 27;10(3):e1004247. doi: 10.1371/journal.pgen.1004247. eCollection 2014 Mar.
4
Mouse TBX3 mutants suggest novel molecular mechanisms for Ulnar-mammary syndrome.小鼠 TBX3 突变体提示了桡侧多指-乳房发育综合征的新分子机制。
PLoS One. 2013 Jul 2;8(7):e67841. doi: 10.1371/journal.pone.0067841. Print 2013.
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Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.利用早期中更新世马的基因组序列重新校准马的进化。
Nature. 2013 Jul 4;499(7456):74-8. doi: 10.1038/nature12323. Epub 2013 Jun 26.
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Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice.DMRT3 基因突变影响马的运动能力和小鼠的脊髓回路功能。
Nature. 2012 Aug 30;488(7413):642-6. doi: 10.1038/nature11399.
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Copy number expansion of the STX17 duplication in melanoma tissue from Grey horses.黑色素瘤组织中 STX17 重复序列的拷贝数扩增。
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AdapterRemoval: easy cleaning of next-generation sequencing reads.AdapterRemoval:轻松清理新一代测序读数。
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Genetic variation in T-box binding element functionally affects SCN5A/SCN10A enhancer.T 盒结合元件的遗传变异对 SCN5A/SCN10A 增强子具有功能影响。
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A linear complexity phasing method for thousands of genomes.一种用于数千个基因组的线性复杂度相位分析方法。
Nat Methods. 2011 Dec 4;9(2):179-81. doi: 10.1038/nmeth.1785.

TBX3基因的调控突变破坏了马的不对称毛发色素沉着,而这种色素沉着是马的暗褐色伪装色的基础。

Regulatory mutations in TBX3 disrupt asymmetric hair pigmentation that underlies Dun camouflage color in horses.

作者信息

Imsland Freyja, McGowan Kelly, Rubin Carl-Johan, Henegar Corneliu, Sundström Elisabeth, Berglund Jonas, Schwochow Doreen, Gustafson Ulla, Imsland Páll, Lindblad-Toh Kerstin, Lindgren Gabriella, Mikko Sofia, Millon Lee, Wade Claire, Schubert Mikkel, Orlando Ludovic, Penedo Maria Cecilia T, Barsh Gregory S, Andersson Leif

机构信息

Science for Life Laboratory Uppsala, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.

HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.

出版信息

Nat Genet. 2016 Feb;48(2):152-8. doi: 10.1038/ng.3475. Epub 2015 Dec 21.

DOI:10.1038/ng.3475
PMID:26691985
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4731265/
Abstract

Dun is a wild-type coat color in horses characterized by pigment dilution with a striking pattern of dark areas termed primitive markings. Here we show that pigment dilution in Dun horses is due to radially asymmetric deposition of pigment in the growing hair caused by localized expression of the T-box 3 (TBX3) transcription factor in hair follicles, which in turn determines the distribution of hair follicle melanocytes. Most domestic horses are non-dun, a more intensely pigmented phenotype caused by regulatory mutations impairing TBX3 expression in the hair follicle, resulting in a more circumferential distribution of melanocytes and pigment granules in individual hairs. We identified two different alleles (non-dun1 and non-dun2) causing non-dun color. non-dun2 is a recently derived allele, whereas the Dun and non-dun1 alleles are found in ancient horse DNA, demonstrating that this polymorphism predates horse domestication. These findings uncover a new developmental role for T-box genes and new aspects of hair follicle biology and pigmentation.

摘要

骝色是马的一种野生型毛色,其特征是色素稀释,并带有显著的深色区域图案,称为原始斑纹。我们在此表明,骝色马的色素稀释是由于毛囊中T盒3(TBX3)转录因子的局部表达导致生长毛发中色素的径向不对称沉积,这反过来又决定了毛囊黑素细胞的分布。大多数家养马是非骝色的,这是一种色素沉着更深的表型,由调节性突变导致毛囊中TBX3表达受损引起,导致单个毛发中黑素细胞和色素颗粒的分布更呈圆周状。我们鉴定出了两种导致非骝色的不同等位基因(非骝色1和非骝色2)。非骝色2是最近衍生出的等位基因,而骝色和非骝色1等位基因则存在于古代马的DNA中,这表明这种多态性早于马的驯化。这些发现揭示了T盒基因的一个新的发育作用以及毛囊生物学和色素沉着的新方面。