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耗散粒子动力学中有效的施密特数标度

Efficient Schmidt number scaling in dissipative particle dynamics.

作者信息

Krafnick Ryan C, García Angel E

机构信息

Department of Physics, Applied Physics, and Astronomy and the Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, New York 12180, USA.

出版信息

J Chem Phys. 2015 Dec 28;143(24):243106. doi: 10.1063/1.4930921.

Abstract

Dissipative particle dynamics is a widely used mesoscale technique for the simulation of hydrodynamics (as well as immersed particles) utilizing coarse-grained molecular dynamics. While the method is capable of describing any fluid, the typical choice of the friction coefficient γ and dissipative force cutoff rc yields an unacceptably low Schmidt number Sc for the simulation of liquid water at standard temperature and pressure. There are a variety of ways to raise Sc, such as increasing γ and rc, but the relative cost of modifying each parameter (and the concomitant impact on numerical accuracy) has heretofore remained undetermined. We perform a detailed search over the parameter space, identifying the optimal strategy for the efficient and accuracy-preserving scaling of Sc, using both numerical simulations and theoretical predictions. The composite results recommend a parameter choice that leads to a speed improvement of a factor of three versus previously utilized strategies.

摘要

耗散粒子动力学是一种广泛应用的中尺度技术,用于利用粗粒度分子动力学模拟流体动力学(以及浸没粒子)。虽然该方法能够描述任何流体,但对于标准温度和压力下液态水的模拟,摩擦系数γ和耗散力截止值rc的典型选择会产生低得令人无法接受的施密特数Sc。有多种提高Sc的方法,例如增加γ和rc,但迄今为止,修改每个参数的相对成本(以及对数值精度的相应影响)仍未确定。我们在参数空间中进行了详细搜索,使用数值模拟和理论预测,确定了有效且保持精度地缩放Sc的最优策略。综合结果推荐了一种参数选择,与先前使用的策略相比,速度提高了三倍。

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