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大肠杆菌代谢通量的适应性遗传稳健性。

Adaptive Genetic Robustness of Escherichia coli Metabolic Fluxes.

作者信息

Ho Wei-Chin, Zhang Jianzhi

机构信息

Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor.

Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor

出版信息

Mol Biol Evol. 2016 May;33(5):1164-76. doi: 10.1093/molbev/msw002. Epub 2016 Jan 5.

Abstract

Genetic robustness refers to phenotypic invariance in the face of mutation and is a common characteristic of life, but its evolutionary origin is highly controversial. Genetic robustness could be an intrinsic property of biological systems, a result of direct natural selection, or a byproduct of selection for environmental robustness. To differentiate among these hypotheses, we analyze the metabolic network of Escherichia coli and comparable functional random networks. Treating the flux of each reaction as a trait and computationally predicting trait values upon mutations or environmental shifts, we discover that 1) genetic robustness is greater for the actual network than the random networks, 2) the genetic robustness of a trait increases with trait importance and this correlation is stronger in the actual network than in the random networks, and 3) the above result holds even after the control of environmental robustness. These findings demonstrate an adaptive origin of genetic robustness, consistent with the theoretical prediction that, under certain conditions, direct selection is sufficiently powerful to promote genetic robustness in cellular organisms.

摘要

遗传稳健性是指面对突变时的表型不变性,是生命的一个共同特征,但其进化起源极具争议。遗传稳健性可能是生物系统的固有属性、直接自然选择的结果,或是对环境稳健性选择的副产品。为了区分这些假说,我们分析了大肠杆菌的代谢网络以及类似的功能随机网络。将每个反应的通量视为一个性状,并通过计算预测突变或环境变化后的性状值,我们发现:1)实际网络的遗传稳健性高于随机网络;2)一个性状的遗传稳健性随性状重要性增加,且这种相关性在实际网络中比在随机网络中更强;3)即使在控制了环境稳健性之后,上述结果依然成立。这些发现证明了遗传稳健性的适应性起源,与理论预测一致,即在某些条件下,直接选择足以强大到促进细胞生物体中的遗传稳健性。

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