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一种整合的系统生物学方法将正辅因子4鉴定为一种可提高重编程效率的因子。

An integrated systems biology approach identifies positive cofactor 4 as a factor that increases reprogramming efficiency.

作者信息

Jo Junghyun, Hwang Sohyun, Kim Hyung Joon, Hong Soomin, Lee Jeoung Eun, Lee Sung-Geum, Baek Ahmi, Han Heonjong, Lee Jin Il, Lee Insuk, Lee Dong Ryul

机构信息

Department of Biomedical Science, College of Life Science, CHA University, Seoul, Korea.

Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea.

出版信息

Nucleic Acids Res. 2016 Feb 18;44(3):1203-15. doi: 10.1093/nar/gkv1468. Epub 2016 Jan 5.

Abstract

Spermatogonial stem cells (SSCs) can spontaneously dedifferentiate into embryonic stem cell (ESC)-like cells, which are designated as multipotent SSCs (mSSCs), without ectopic expression of reprogramming factors. Interestingly, SSCs express key pluripotency genes such as Oct4, Sox2, Klf4 and Myc. Therefore, molecular dissection of mSSC reprogramming may provide clues about novel endogenous reprogramming or pluripotency regulatory factors. Our comparative transcriptome analysis of mSSCs and induced pluripotent stem cells (iPSCs) suggests that they have similar pluripotency states but are reprogrammed via different transcriptional pathways. We identified 53 genes as putative pluripotency regulatory factors using an integrated systems biology approach. We demonstrated a selected candidate, Positive cofactor 4 (Pc4), can enhance the efficiency of somatic cell reprogramming by promoting and maintaining transcriptional activity of the key reprograming factors. These results suggest that Pc4 has an important role in inducing spontaneous somatic cell reprogramming via up-regulation of key pluripotency genes.

摘要

精原干细胞(SSCs)可自发去分化为胚胎干细胞(ESC)样细胞,这些细胞被称为多能精原干细胞(mSSCs),且无需重编程因子的异位表达。有趣的是,SSCs表达关键的多能性基因,如Oct4、Sox2、Klf4和Myc。因此,对mSSC重编程的分子剖析可能为新型内源性重编程或多能性调控因子提供线索。我们对mSSCs和诱导多能干细胞(iPSCs)的比较转录组分析表明,它们具有相似的多能性状态,但通过不同的转录途径进行重编程。我们使用综合系统生物学方法鉴定出53个基因作为假定的多能性调控因子。我们证明了一个选定的候选基因,正向辅因子4(Pc4),可通过促进和维持关键重编程因子的转录活性来提高体细胞重编程的效率。这些结果表明,Pc4通过上调关键多能性基因在诱导自发体细胞重编程中起重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3509/4756831/d57ffd32cd9e/gkv1468fig1.jpg

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