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非酶糖酵解和磷酸戊糖途径的条件性铁和pH依赖性活性

Conditional iron and pH-dependent activity of a non-enzymatic glycolysis and pentose phosphate pathway.

作者信息

Keller Markus A, Zylstra Andre, Castro Cecilia, Turchyn Alexandra V, Griffin Julian L, Ralser Markus

机构信息

Department of Biochemistry and Cambridge Systems Biology Centre, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, UK.

Department of Earth Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EQ, UK.

出版信息

Sci Adv. 2016 Jan 15;2(1):e1501235. doi: 10.1126/sciadv.1501235. eCollection 2016 Jan.

Abstract

Little is known about the evolutionary origins of metabolism. However, key biochemical reactions of glycolysis and the pentose phosphate pathway (PPP), ancient metabolic pathways central to the metabolic network, have non-enzymatic pendants that occur in a prebiotically plausible reaction milieu reconstituted to contain Archean sediment metal components. These non-enzymatic reactions could have given rise to the origin of glycolysis and the PPP during early evolution. Using nuclear magnetic resonance spectroscopy and high-content metabolomics that allowed us to measure several thousand reaction mixtures, we experimentally address the chemical logic of a metabolism-like network constituted from these non-enzymatic reactions. Fe(II), the dominant transition metal component of Archean oceanic sediments, has binding affinity toward metabolic sugar phosphates and drives metabolism-like reactivity acting as both catalyst and cosubstrate. Iron and pH dependencies determine a metabolism-like network topology and comediate reaction rates over several orders of magnitude so that the network adopts conditional activity. Alkaline pH triggered the activity of the non-enzymatic PPP pendant, whereas gentle acidic or neutral conditions favored non-enzymatic glycolytic reactions. Fe(II)-sensitive glycolytic and PPP-like reactions thus form a chemical network mimicking structural features of extant carbon metabolism, including topology, pH dependency, and conditional reactivity. Chemical networks that obtain structure and catalysis on the basis of transition metals found in Archean sediments are hence plausible direct precursors of cellular metabolic networks.

摘要

关于新陈代谢的进化起源,我们知之甚少。然而,糖酵解和磷酸戊糖途径(PPP)的关键生化反应,作为代谢网络核心的古老代谢途径,具有非酶对应物,这些对应物发生在一个重建的含有太古宙沉积物金属成分的益生元合理反应环境中。这些非酶反应可能在早期进化过程中引发了糖酵解和PPP的起源。利用核磁共振光谱和高含量代谢组学,使我们能够测量数千种反应混合物,我们通过实验研究了由这些非酶反应构成的类似代谢网络的化学逻辑。亚铁(Fe(II))是太古宙海洋沉积物的主要过渡金属成分,它对代谢糖磷酸具有结合亲和力,并作为催化剂和共底物驱动类似代谢的反应活性。铁和pH依赖性决定了类似代谢网络的拓扑结构,并在几个数量级上共同调节反应速率,从而使网络具有条件活性。碱性pH触发了非酶PPP对应物的活性,而温和的酸性或中性条件有利于非酶糖酵解反应。因此,对亚铁敏感的糖酵解和类似PPP的反应形成了一个化学网络,模仿了现存碳代谢的结构特征,包括拓扑结构、pH依赖性和条件反应性。基于太古宙沉积物中发现的过渡金属获得结构和催化作用的化学网络因此可能是细胞代谢网络的直接前身。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6053/4730858/5a9a6dd2ec35/1501235-F1.jpg

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