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DNA限制修饰系统在炭疽芽孢杆菌生物学中的作用

The Role of DNA Restriction-Modification Systems in the Biology of Bacillus anthracis.

作者信息

Sitaraman Ramakrishnan

机构信息

Department of Biotechnology, TERI University New Delhi, India.

出版信息

Front Microbiol. 2016 Jan 22;7:11. doi: 10.3389/fmicb.2016.00011. eCollection 2016.

Abstract

Restriction-modification (R-M) systems are widespread among prokaryotes and, depending on their type, may be viewed as selfish genetic elements that persist as toxin-antitoxin modules, or as cellular defense systems against phage infection that confer a selective advantage to the host bacterium. Studies in the last decade have made it amply clear that these two options do not exhaust the list of possible biological roles for R-M systems. Their presence in a cell may also have a bearing on other processes such as horizontal gene transfer and gene regulation. From genome sequencing and experimental data, we know that Bacillus anthracis encodes at least three methylation-dependent (typeIV) restriction endonucleases (RE), and an orphan DNA methyltransferase. In this article, we first present an outline of our current knowledge of R-M systems in B. anthracis. Based on available DNA sequence data, and on our current understanding of the functions of similar genes in other systems, we conclude with hypotheses on the possible roles of the three REs and the orphan DNA methyltransferase.

摘要

限制修饰(R-M)系统在原核生物中广泛存在,根据其类型,可被视为作为毒素-抗毒素模块持续存在的自私遗传元件,或作为赋予宿主细菌选择性优势的针对噬菌体感染的细胞防御系统。过去十年的研究已充分表明,这两种情况并未穷尽R-M系统可能的生物学作用。它们在细胞中的存在也可能与其他过程有关,如水平基因转移和基因调控。从基因组测序和实验数据中,我们知道炭疽芽孢杆菌编码至少三种甲基化依赖性(IV型)限制性内切酶(RE)和一种孤儿DNA甲基转移酶。在本文中,我们首先概述了我们目前对炭疽芽孢杆菌中R-M系统的了解。基于现有的DNA序列数据以及我们目前对其他系统中类似基因功能的理解,我们最后提出了关于这三种RE和孤儿DNA甲基转移酶可能作用的假设。

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本文引用的文献

1
Restriction modification systems as engines of diversity.作为多样性引擎的限制修饰系统。
Front Microbiol. 2015 Jun 2;6:528. doi: 10.3389/fmicb.2015.00528. eCollection 2015.
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Highlights of the DNA cutters: a short history of the restriction enzymes.DNA 剪刀的亮点:限制酶的简史。
Nucleic Acids Res. 2014 Jan;42(1):3-19. doi: 10.1093/nar/gkt990. Epub 2013 Oct 18.
5
The other face of restriction: modification-dependent enzymes.限制的另一面:依赖修饰的酶。
Nucleic Acids Res. 2014 Jan;42(1):56-69. doi: 10.1093/nar/gkt747. Epub 2013 Aug 29.
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Methylation-dependent DNA restriction in Bacillus anthracis.炭疽杆菌中依赖于甲基化的 DNA 限制。
Gene. 2012 Feb 15;494(1):44-50. doi: 10.1016/j.gene.2011.11.061. Epub 2011 Dec 8.
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