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一种非核糖体肽合成酶在卡普霉素生物合成过程中L-赖氨酸内酰胺化反应中的作用

The Role of a Nonribosomal Peptide Synthetase in l-Lysine Lactamization During Capuramycin Biosynthesis.

作者信息

Liu Xiaodong, Jin Yuanyuan, Cui Zheng, Nonaka Koichi, Baba Satoshi, Funabashi Masanori, Yang Zhaoyong, Van Lanen Steven G

机构信息

Department of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington, KY, 40536, USA.

Key Laboratory of Biotechnology of Antibiotics, Institute of Medicinal Biotechnology, Chinese Academy of Medicinal Sciences & Peking Union Medical College, Beijing, China.

出版信息

Chembiochem. 2016 May 3;17(9):804-10. doi: 10.1002/cbic.201500701. Epub 2016 Mar 18.

Abstract

Capuramycins are one of several known classes of natural products that contain an l-Lys-derived l-α-amino-ɛ-caprolactam (l-ACL) unit. The α-amino group of l-ACL in a capuramycin is linked to an unsaturated hexuronic acid component through an amide bond that was previously shown to originate by an ATP-independent enzymatic route. With the aid of a combined in vivo and in vitro approach, a predicted tridomain nonribosomal peptide synthetase CapU is functionally characterized here as the ATP-dependent amide-bond-forming catalyst responsible for the biosynthesis of the remaining amide bond present in l-ACL. The results are consistent with the adenylation domain of CapU as the essential catalytic component for l-Lys activation and thioesterification of the adjacent thiolation domain. However, in contrast to expectations, lactamization does not require any additional domains or proteins and is likely a nonenzymatic event. The results set the stage for examining whether a similar NRPS-mediated mechanism is employed in the biosynthesis of other l-ACL-containing natural products and, just as intriguingly, how spontaneous lactamization is avoided in the numerous NRPS-derived peptides that contain an unmodified l-Lys residue.

摘要

卡普霉素是几种已知的天然产物类别之一,这些天然产物含有一个源自L-赖氨酸的L-α-氨基-ε-己内酰胺(L-ACL)单元。卡普霉素中L-ACL的α-氨基通过一个酰胺键与一个不饱和己糖醛酸成分相连,此前已证明该酰胺键是通过一条不依赖ATP的酶促途径形成的。借助体内和体外相结合的方法,预测的三结构域非核糖体肽合成酶CapU在此被功能表征为负责L-ACL中剩余酰胺键生物合成的依赖ATP的酰胺键形成催化剂。结果表明CapU的腺苷化结构域是L-赖氨酸激活和相邻硫醇化结构域硫酯化的关键催化成分。然而,与预期相反,内酰胺化不需要任何额外的结构域或蛋白质,可能是一个非酶促事件。这些结果为研究其他含L-ACL的天然产物的生物合成中是否采用类似的NRPS介导机制奠定了基础,同样有趣的是,在众多含有未修饰L-赖氨酸残基的NRPS衍生肽中,如何避免自发内酰胺化。

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本文引用的文献

2
Structural, kinetic and proteomic characterization of acetyl phosphate-dependent bacterial protein acetylation.
PLoS One. 2014 Apr 22;9(4):e94816. doi: 10.1371/journal.pone.0094816. eCollection 2014.
3
Analyses of MbtB, MbtE, and MbtF suggest revisions to the mycobactin biosynthesis pathway in Mycobacterium tuberculosis.
J Bacteriol. 2012 Jun;194(11):2809-18. doi: 10.1128/JB.00088-12. Epub 2012 Mar 23.
4
An ATP-independent strategy for amide bond formation in antibiotic biosynthesis.
Nat Chem Biol. 2010 Aug;6(8):581-6. doi: 10.1038/nchembio.393. Epub 2010 Jun 20.
5
PKS and NRPS release mechanisms.
Nat Prod Rep. 2010 Feb;27(2):255-78. doi: 10.1039/b912037h. Epub 2009 Dec 4.
6
Structural insights into nonribosomal peptide enzymatic assembly lines.
Nat Prod Rep. 2009 Aug;26(8):987-1000. doi: 10.1039/b904543k. Epub 2009 May 22.
7
Identification of the biosynthetic gene cluster of A-500359s in Streptomyces griseus SANK60196.
J Antibiot (Tokyo). 2009 Jun;62(6):325-32. doi: 10.1038/ja.2009.38. Epub 2009 May 29.
8
Crystal structure of the termination module of a nonribosomal peptide synthetase.
Science. 2008 Aug 1;321(5889):659-63. doi: 10.1126/science.1159850. Epub 2008 Jun 26.
9
Nonribosomal peptide synthetases involved in the production of medically relevant natural products.
Mol Pharm. 2008 Mar-Apr;5(2):191-211. doi: 10.1021/mp700137g. Epub 2008 Jan 25.

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