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精准医学:用于特发性炎症性疾病诊断和治疗的个性化蛋白质组学

Precision Medicine: Personalized Proteomics for the Diagnosis and Treatment of Idiopathic Inflammatory Disease.

作者信息

Velez Gabriel, Roybal C Nathaniel, Colgan Diana, Tsang Stephen H, Bassuk Alexander G, Mahajan Vinit B

机构信息

Omics Laboratory, University of Iowa Carver College of Medicine, Iowa City2Department of Ophthalmology and Visual Sciences, University of Iowa Carver College of Medicine, Iowa City3Medical Scientist Training Program, University of Iowa Carver College of M.

Omics Laboratory, University of Iowa Carver College of Medicine, Iowa City2Department of Ophthalmology and Visual Sciences, University of Iowa Carver College of Medicine, Iowa City.

出版信息

JAMA Ophthalmol. 2016 Apr;134(4):444-8. doi: 10.1001/jamaophthalmol.2015.5934.

Abstract

IMPORTANCE

To better characterize posterior uveitis, vitreous samples from 15 patients were subjected to antibody arrays, and the expression levels of 200 human cytokines were evaluated. Expression was analyzed by 1-way analysis of variance (significance at P < .01), unsupervised cluster algorithm, and pathway analysis.

OBSERVATIONS

Unbiased clustering of patients, based on their cytokine expression profile, suggested that particular protein networks and molecular pathways are altered in various forms of uveitis. Expression of interleukin 23 (IL-23), IL-1 receptor I (IL-1RI), IL-17R, tissue inhibitors of metalloproteinase 1 and 2 (TIMP-1 and TIMP-2), insulinlike growth factor-binding protein 2 (IGFBP-2), nerve growth factor (b-NGF), platelet-derived growth factor receptor β polypeptide (PDGFRb), bone morphogenic protein 4 (BMP-4), and stem cell factor (SCF) constituted a common cytokine signature in the vitreous of patients with uveitis. In 1 patient with progressive, idiopathic visual loss, this last-line analysis implicated retinal autoimmunity, a diagnosis that was validated when her serum sample was found to contain antibodies to S-arrestin, a retinal protein and potent cause of autoimmune retinal degeneration.

CONCLUSIONS AND RELEVANCE

The analysis identifies a common cytokine signature for posterior uveitis and guides the diagnosis of a patient with idiopathic uveitis. Personalized treatment reversed the visual loss, illustrating how proteomic tools may individualize therapy.

摘要

重要性

为了更好地表征后葡萄膜炎,对15例患者的玻璃体样本进行抗体阵列检测,并评估200种人类细胞因子的表达水平。通过单因素方差分析(P < 0.01时有统计学意义)、无监督聚类算法和通路分析来分析表达情况。

观察结果

基于细胞因子表达谱对患者进行无偏聚类分析表明,特定的蛋白质网络和分子通路在各种形式的葡萄膜炎中发生改变。白细胞介素23(IL-23)、白细胞介素1受体I(IL-1RI)、白细胞介素17受体(IL-17R)、金属蛋白酶组织抑制剂1和2(TIMP-1和TIMP-2)、胰岛素样生长因子结合蛋白2(IGFBP-2)、神经生长因子(b-NGF)、血小板衍生生长因子受体β多肽(PDGFRb)、骨形态发生蛋白4(BMP-4)和干细胞因子(SCF)的表达构成了葡萄膜炎患者玻璃体中的常见细胞因子特征。在1例进行性特发性视力丧失患者中,这种最终分析提示存在视网膜自身免疫性,当发现她的血清样本中含有针对S-抑制蛋白(一种视网膜蛋白且是自身免疫性视网膜变性的确切病因)时这一诊断得到证实。

结论及意义

该分析确定了后葡萄膜炎的常见细胞因子特征,并指导特发性葡萄膜炎患者的诊断。个性化治疗逆转了视力丧失,说明了蛋白质组学工具如何实现个体化治疗。

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