Rodrigo-Torres Lidia, Pujalte María J, Arahal David R
Departamento de Microbiología y Ecología and Colección Española de Cultivos Tipo (CECT), Universidad de Valencia, Valencia, Spain.
Mar Genomics. 2016 Aug;28:83-86. doi: 10.1016/j.margen.2016.01.006. Epub 2016 Feb 3.
Shimia marina is a member of the family Rhodobacteraceae described in 2006. Strain CL-TA03(T) (=CECT 7688(T)) was isolated from a biofilm formed on an acrylic slide submerged in surface water in a coastal fish farm in Tongyeong, Korea. Here we report the draft genome sequence and annotation of S. marina CECT 7688(T) which is composed by 4,001,860bp arranged in 45 scaffolds with a G+C content of 57.4%, 3878 protein coding genes, 40 tRNA genes, 4 rRNA genes and 1 repeat region. An overview of annotated genes revealed diverse genes encoding for exopolysaccharide and capsular biosynthesis enzymes, secondary metabolite biosynthesis enzymes, multiple antibiotic and metal resistance and the ability for degrading aromatic compounds.
希米亚海杆菌是2006年描述的红杆菌科的一个成员。菌株CL-TA03(T)(=CECT 7688(T))是从韩国统营一个沿海养鱼场中浸没在地表水的丙烯酸玻片上形成的生物膜中分离出来的。在此,我们报告希米亚海杆菌CECT 7688(T)的基因组草图序列及注释,其由4,001,860bp组成,排列在45个支架中,G+C含量为57.4%,有3878个蛋白质编码基因、40个tRNA基因、4个rRNA基因和1个重复区域。对注释基因的概述显示,有多种基因编码胞外多糖和荚膜生物合成酶、次生代谢物生物合成酶、多种抗生素和金属抗性以及降解芳香化合物的能力。