Makendi Carine, Page Andrew J, Wren Brendan W, Le Thi Phuong Tu, Clare Simon, Hale Christine, Goulding David, Klemm Elizabeth J, Pickard Derek, Okoro Chinyere, Hunt Martin, Thompson Corinne N, Phu Huong Lan Nguyen, Tran Do Hoang Nhu, Thwaites Guy E, Le Hello Simon, Brisabois Anne, Weill François-Xavier, Baker Stephen, Dougan Gordon
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
The London School of Hygiene and Tropical Medicine, London, United Kingdom.
PLoS Negl Trop Dis. 2016 Feb 11;10(2):e0004446. doi: 10.1371/journal.pntd.0004446. eCollection 2016 Feb.
Salmonella enterica serovar Weltevreden (S. Weltevreden) is an emerging cause of diarrheal and invasive disease in humans residing in tropical regions. Despite the regional and international emergence of this Salmonella serovar, relatively little is known about its genetic diversity, genomics or virulence potential in model systems. Here we used whole genome sequencing and bioinformatics analyses to define the phylogenetic structure of a diverse global selection of S. Weltevreden. Phylogenetic analysis of more than 100 isolates demonstrated that the population of S. Weltevreden can be segregated into two main phylogenetic clusters, one associated predominantly with continental Southeast Asia and the other more internationally dispersed. Subcluster analysis suggested the local evolution of S. Weltevreden within specific geographical regions. Four of the isolates were sequenced using long read sequencing to produce high quality reference genomes. Phenotypic analysis in Hep-2 cells and in a murine infection model indicated that S. Weltevreden were significantly attenuated in these models compared to the classical S. Typhimurium reference strain SL1344. Our work outlines novel insights into this important emerging pathogen and provides a baseline understanding for future research studies.
肠炎沙门氏菌韦尔特弗雷登血清型(S. Weltevreden)是热带地区人类腹泻和侵袭性疾病的一个新出现的病因。尽管这种沙门氏菌血清型在区域和国际上都有出现,但在模型系统中,对其遗传多样性、基因组学或毒力潜力的了解相对较少。在这里,我们使用全基因组测序和生物信息学分析来确定全球多种S. Weltevreden菌株的系统发育结构。对100多个分离株的系统发育分析表明,S. Weltevreden菌株群体可分为两个主要的系统发育簇,一个主要与东南亚大陆相关,另一个在国际上分布更广。亚簇分析表明S. Weltevreden在特定地理区域内的局部进化。使用长读长测序对其中4个分离株进行测序,以产生高质量的参考基因组。在Hep-2细胞和小鼠感染模型中的表型分析表明,与经典的鼠伤寒沙门氏菌参考菌株SL1344相比,S. Weltevreden在这些模型中显著减毒。我们的工作概述了对这种重要的新出现病原体的新见解,并为未来的研究提供了一个基线认识。