• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

对硝基苯甲酸与N,N'-双(吡啶-3-基甲基)乙二酰胺的2:1共晶体:晶体结构与 Hirshfeld 表面分析

A 2:1 co-crystal of p-nitro-benzoic acid and N,N'-bis-(pyridin-3-ylmeth-yl)ethanedi-amide: crystal structure and Hirshfeld surface analysis.

作者信息

Syed Sabrina, Halim Siti Nadiah Abdul, Jotani Mukesh M, Tiekink Edward R T

机构信息

Department of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia.

Department of Physics, Bhavan's Sheth R. A. College of Science, Ahmedabad, Gujarat 380001, India.

出版信息

Acta Crystallogr E Crystallogr Commun. 2016 Jan 1;72(Pt 1):76-82. doi: 10.1107/S2056989015024068.

DOI:10.1107/S2056989015024068
PMID:26870591
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4704746/
Abstract

The title 2:1 co-crystal, 2C7H5NO4·C14H14N4O2, in which the complete di-amide mol-ecule is generated by crystallographic inversion symmetry, features a three-mol-ecule aggregate sustained by hydroxyl-O-H⋯N(pyrid-yl) hydrogen bonds. The p-nitro-benzoic acid mol-ecule is non-planar, exhibiting twists of both the carb-oxy-lic acid and nitro groups, which form dihedral angles of 10.16 (9) and 4.24 (4)°, respectively, with the benzene ring. The di-amide mol-ecule has a conformation approximating to a Z shape, with the pyridyl rings lying to either side of the central, almost planar di-amide residue (r.m.s. deviation of the eight atoms being 0.025 Å), and forming dihedral angles of 77.22 (6)° with it. In the crystal, three-mol-ecule aggregates are linked into a linear supra-molecular ladder sustained by amide-N-H⋯O(nitro) hydrogen bonds and orientated along [10-4]. The ladders are connected into a double layer via pyridyl- and benzene-C-H⋯O(amide) inter-actions, which, in turn, are connected into a three-dimensional architecture via π-π stacking inter-actions between pyridyl and benzene rings [inter-centroid distance = 3.6947 (8) Å]. An evaluation of the Hirshfeld surfaces confirm the importance of inter-molecular inter-actions involving oxygen atoms as well as the π-π inter-actions.

摘要

标题为2:1的共晶体2C₇H₅NO₄·C₁₄H₁₄N₄O₂中,完整的二酰胺分子由晶体学倒转对称性产生,其特征是通过羟基 - O - H⋯N(吡啶基)氢键形成三分子聚集体。对硝基苯甲酸分子是非平面的,羧酸基团和硝基均存在扭曲,它们与苯环分别形成10.16 (9)°和4.24 (4)°的二面角。二酰胺分子的构象近似Z形,吡啶环位于中心几乎平面的二酰胺残基两侧(八个原子的均方根偏差为0.025 Å),并与其形成77.22 (6)°的二面角。在晶体中,三分子聚集体通过酰胺 - N - H⋯O(硝基)氢键连接成线性超分子阶梯,并沿[10 - 4]方向排列。这些阶梯通过吡啶基和苯 - C - H⋯O(酰胺)相互作用连接成双层结构,进而通过吡啶环和苯环之间的π - π堆积相互作用(质心间距 = 3.6947 (8) Å)连接成三维结构。对Hirshfeld表面的评估证实了涉及氧原子的分子间相互作用以及π - π相互作用的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/a313ebbe2d9d/e-72-00076-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/55c09f177530/e-72-00076-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/723b1d4a4731/e-72-00076-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/751061dd9dcd/e-72-00076-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/793111672bfc/e-72-00076-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/089152ba2e2b/e-72-00076-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/9bf2c2226b88/e-72-00076-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/b9017fe8d687/e-72-00076-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/1c5c6bcd1419/e-72-00076-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/a313ebbe2d9d/e-72-00076-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/55c09f177530/e-72-00076-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/723b1d4a4731/e-72-00076-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/751061dd9dcd/e-72-00076-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/793111672bfc/e-72-00076-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/089152ba2e2b/e-72-00076-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/9bf2c2226b88/e-72-00076-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/b9017fe8d687/e-72-00076-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/1c5c6bcd1419/e-72-00076-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b13/4704746/a313ebbe2d9d/e-72-00076-fig9.jpg

相似文献

1
A 2:1 co-crystal of p-nitro-benzoic acid and N,N'-bis-(pyridin-3-ylmeth-yl)ethanedi-amide: crystal structure and Hirshfeld surface analysis.对硝基苯甲酸与N,N'-双(吡啶-3-基甲基)乙二酰胺的2:1共晶体:晶体结构与 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2016 Jan 1;72(Pt 1):76-82. doi: 10.1107/S2056989015024068.
2
A 2:1 co-crystal of 2-methyl-benzoic acid and N,N'-bis-(pyridin-4-ylmeth-yl)ethanedi-amide: crystal structure and Hirshfeld surface analysis.2-甲基苯甲酸与N,N'-双-(吡啶-4-基甲基)乙二酰胺的2:1共晶体:晶体结构与 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2016 Feb 20;72(Pt 3):391-8. doi: 10.1107/S2056989016002735. eCollection 2016 Mar 1.
3
Crystal structure, Hirshfeld surface analysis and computational study of the 1:2 co-crystal formed between ,'-bis-[(pyridin-4-yl)meth-yl]ethanedi-amide and 3-chloro-benzoic acid.,'-双[(吡啶-4-基)甲基]乙二酰胺与3-氯苯甲酸形成的1:2共晶体的晶体结构、 Hirshfeld表面分析及计算研究
Acta Crystallogr E Crystallogr Commun. 2020 May 19;76(Pt 6):870-876. doi: 10.1107/S2056989020006568. eCollection 2020 Jun 1.
4
Crystal structure, Hirshfeld surface analysis and computational study of the 1:2 co-crystal formed between ,'-bis-(pyridin-4-ylmeth-yl)ethane-diamide and 4-chloro-benzoic acid.α,α'-双(吡啶-4-基甲基)乙二酰胺与4-氯苯甲酸形成的1:2共晶体的晶体结构、 Hirshfeld表面分析及计算研究
Acta Crystallogr E Crystallogr Commun. 2020 Jan 21;76(Pt 2):245-253. doi: 10.1107/S2056989020000572. eCollection 2020 Feb 1.
5
,'-Bis(pyridin-3-ylmeth-yl)ethanedi-amide monohydrate: crystal structure, Hirshfeld surface analysis and computational study.N,N'-双(吡啶-3-基甲基)乙二酰胺一水合物:晶体结构、 Hirshfeld表面分析及计算研究
Acta Crystallogr E Crystallogr Commun. 2020 Jan 1;76(Pt 1):25-31. doi: 10.1107/S2056989019016153.
6
The 1:2 co-crystal formed between ,'-bis(pyridin-4-ylmeth-yl)ethanedi-amide and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study.,'-双(吡啶-4-基甲基)乙二酰胺与苯甲酸形成的1:2共晶体:晶体结构、 Hirshfeld表面分析及计算研究
Acta Crystallogr E Crystallogr Commun. 2020 Jan 1;76(Pt 1):102-110. doi: 10.1107/S2056989019016840.
7
,'-Bis(pyridin-4-ylmeth-yl)oxalamide benzene monosolvate: crystal structure, Hirshfeld surface analysis and computational study.,-双(吡啶-4-基甲基)草酰胺苯单溶剂合物:晶体结构、 Hirshfeld表面分析及计算研究。
Acta Crystallogr E Crystallogr Commun. 2019 Jul 9;75(Pt 8):1133-1139. doi: 10.1107/S2056989019009551. eCollection 2019 Aug 1.
8
A 1:2 co-crystal of 2,2'-di-thiodi-benzoic acid and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study.2,2'-二硫代二苯甲酸与苯甲酸的1:2共晶体:晶体结构、 Hirshfeld表面分析及计算研究
Acta Crystallogr E Crystallogr Commun. 2019 Jan 1;75(Pt 1):1-7. doi: 10.1107/S2056989018017097.
9
A 1:1:1 co-crystal solvate comprising 2,2'-di-thiodi-benzoic acid, 2-chloro-benzoic acid and ,-di-methyl-formamide: crystal structure, Hirshfeld surface analysis and computational study.一种由2,2'-二硫代二苯甲酸、2-氯苯甲酸和N,N-二甲基甲酰胺组成的1:1:1共晶溶剂化物:晶体结构、 Hirshfeld表面分析和计算研究
Acta Crystallogr E Crystallogr Commun. 2019 Mar 26;75(Pt 4):475-481. doi: 10.1107/S205698901900375X. eCollection 2019 Apr 1.
10
The co-crystal N,N'-bis-[(pyridin-1-ium-2-yl)meth-yl]ethane-dithio-amide bis-(2,6-di-nitro-benzoate)-2,6-di-nitro-benzoic acid (1/4).共晶体N,N'-双-[(吡啶-1-鎓-2-基)甲基]乙二硫酰胺双-(2,6-二硝基苯甲酸酯)-2,6-二硝基苯甲酸(1/4)
Acta Crystallogr Sect E Struct Rep Online. 2013 Sep 4;69(Pt 10):o1506-7. doi: 10.1107/S1600536813023490. eCollection 2013.

引用本文的文献

1
,'-Bis(pyridin-3-ylmeth-yl)ethanedi-amide monohydrate: crystal structure, Hirshfeld surface analysis and computational study.N,N'-双(吡啶-3-基甲基)乙二酰胺一水合物:晶体结构、 Hirshfeld表面分析及计算研究
Acta Crystallogr E Crystallogr Commun. 2020 Jan 1;76(Pt 1):25-31. doi: 10.1107/S2056989019016153.
2
The 1:1 co-crystal of 2-bromo-naphthalene-1,4-dione and 1,8-di-hydroxy-anthracene-9,10-dione: crystal structure and Hirshfeld surface analysis.2-溴萘-1,4-二酮与1,8-二羟基蒽-9,10-二酮的1:1共晶体:晶体结构与 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2017 Apr 21;73(Pt 5):738-745. doi: 10.1107/S2056989017005667. eCollection 2017 May 1.
3

本文引用的文献

1
Is there any point in making co-crystals?制备共晶体有意义吗?
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2015 Aug;71(Pt 4):387-91. doi: 10.1107/S2052520615010872. Epub 2015 Jul 14.
2
Molecular crystals by design?
Chem Commun (Camb). 2014 Oct 4;50(76):11079-82. doi: 10.1039/c4cc04972a.
3
The enrichment ratio of atomic contacts in crystals, an indicator derived from the Hirshfeld surface analysis.晶体中原子接触的富集比,一种源自 Hirshfeld 表面分析的指标。
IUCrJ. 2014 Feb 28;1(Pt 2):119-28. doi: 10.1107/S2052252514003327. eCollection 2014 Mar 1.
A 2:1 co-crystal of 2-methyl-benzoic acid and N,N'-bis-(pyridin-4-ylmeth-yl)ethanedi-amide: crystal structure and Hirshfeld surface analysis.
2-甲基苯甲酸与N,N'-双-(吡啶-4-基甲基)乙二酰胺的2:1共晶体:晶体结构与 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2016 Feb 20;72(Pt 3):391-8. doi: 10.1107/S2056989016002735. eCollection 2016 Mar 1.
4
2-({[(Pyridin-1-ium-2-ylmeth-yl)carbamo-yl]form-amido}-meth-yl)pyridin-1-ium bis-(3,5-di-carb-oxy-benzoate): crystal structure and Hirshfeld surface analysis.2 - ({[(吡啶 - 1 - 鎓 - 2 - 基甲基)氨基甲酰基]甲酰胺基}甲基)吡啶 - 1 - 鎓双(3,5 - 二羧基苯甲酸酯):晶体结构和 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2016 Jan 27;72(Pt 2):241-8. doi: 10.1107/S2056989016000980. eCollection 2016 Feb 1.
4
The Cambridge Structural Database in retrospect and prospect.《剑桥结构数据库的回顾与展望》
Angew Chem Int Ed Engl. 2014 Jan 13;53(3):662-71. doi: 10.1002/anie.201306438. Epub 2014 Jan 2.
5
2,2'-(Disulfanediyl)dibenzoic acid-N,N'-bis-(3-pyridyl-meth-yl)ethane-diamide (1/1).2,2'-(二硫代二亚基)二苯甲酸 - N,N'-双 -(3 - 吡啶 - 甲基)乙二酰胺(1/1)
Acta Crystallogr Sect E Struct Rep Online. 2010 Sep 18;66(Pt 10):o2590-1. doi: 10.1107/S1600536810036494.
6
Structure validation in chemical crystallography.化学晶体学中的结构验证
Acta Crystallogr D Biol Crystallogr. 2009 Feb;65(Pt 2):148-55. doi: 10.1107/S090744490804362X. Epub 2009 Jan 20.
7
A short history of SHELX.SHELX简史。
Acta Crystallogr A. 2008 Jan;64(Pt 1):112-22. doi: 10.1107/S0108767307043930. Epub 2007 Dec 21.
8
Designed cocrystals based on the pyridine-iodoalkyne halogen bond.基于吡啶-碘代炔烃卤素键设计的共晶体。
Org Lett. 2005 May 12;7(10):1891-3. doi: 10.1021/ol050184s.
9
Crystal engineering of the composition of pharmaceutical phases. Do pharmaceutical co-crystals represent a new path to improved medicines?药物相组成的晶体工程。药物共晶体是否代表了一条改进药物的新途径?
Chem Commun (Camb). 2004 Sep 7(17):1889-96. doi: 10.1039/b402150a. Epub 2004 Aug 5.
10
Commensurate and incommensurate hydrogen bonds. An exercise in crystal engineering.相称与不相称氢键。晶体工程实例。
J Am Chem Soc. 2001 Nov 7;123(44):11057-64. doi: 10.1021/ja016635v.