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,'-双(吡啶-4-基甲基)乙二酰胺与苯甲酸形成的1:2共晶体:晶体结构、 Hirshfeld表面分析及计算研究

The 1:2 co-crystal formed between ,'-bis(pyridin-4-ylmeth-yl)ethanedi-amide and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study.

作者信息

Tan Sang Loon, Tiekink Edward R T

机构信息

Research Centre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia.

出版信息

Acta Crystallogr E Crystallogr Commun. 2020 Jan 1;76(Pt 1):102-110. doi: 10.1107/S2056989019016840.

DOI:10.1107/S2056989019016840
PMID:31921461
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6944079/
Abstract

The crystal and mol-ecular structures of the title 1:2 co-crystal, CHNO·2CHO, are described. The oxalamide mol-ecule has a (+)-anti-periplanar conformation with the 4-pyridyl residues lying to either side of the central, almost planar CNO chromophore (r.m.s. deviation = 0.0555 Å). The benzoic acid mol-ecules have equivalent, close to planar conformations [C/CO dihedral angle = 6.33 (14) and 3.43 (10)°]. The formation of hy-droxy-O-H⋯N(pyrid-yl) hydrogen bonds between the benzoic acid mol-ecules and the pyridyl residues of the di-amide leads to a three-mol-ecule aggregate. Centrosymmetrically related aggregates assemble into a six-mol-ecule aggregate amide-N-H⋯O(amide) hydrogen bonds through a 10-membered {⋯HNCO} synthon. These are linked into a supra-molecular tape amide-N-H⋯O(carbon-yl) hydrogen bonds and 22-membered {⋯HOCO⋯NCNH} synthons. The contacts between tapes to consolidate the three-dimensional architecture are of the type methyl-ene-C-H⋯O(amide) and pyridyl-C-H⋯O(carbon-yl). These inter-actions are largely electrostatic in nature. Additional non-covalent contacts are identified from an analysis of the calculated Hirshfeld surfaces.

摘要

描述了标题为1:2共晶体CHNO·2CHO的晶体和分子结构。草酰胺分子具有(+)-反式-邻位平面构象,4-吡啶基残基位于中心几乎平面的CNO发色团的两侧(均方根偏差 = 0.0555 Å)。苯甲酸分子具有等效的、接近平面的构象[C/CO二面角 = 6.33 (14)°和3.43 (10)°]。苯甲酸分子与二酰胺的吡啶基残基之间形成羟基-O-H⋯N(吡啶基)氢键,导致形成三分子聚集体。通过10元{⋯HNCO}合成子,中心对称相关的聚集体通过酰胺-N-H⋯O(酰胺)氢键组装成六分子聚集体。这些通过酰胺-N-H⋯O(羰基)氢键和22元{⋯HOCO⋯NCNH}合成子连接成超分子带。带之间的接触以巩固三维结构,类型为亚甲基-C-H⋯O(酰胺)和吡啶基-C-H⋯O(羰基)。这些相互作用在很大程度上是静电性质的。通过对计算的Hirshfeld表面的分析确定了额外的非共价接触。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c8/6944079/99176a55ff9d/e-76-00102-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c8/6944079/58c78083cea0/e-76-00102-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c8/6944079/49ce548d07a5/e-76-00102-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c8/6944079/5f4699386716/e-76-00102-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c8/6944079/0b8b1fe268e4/e-76-00102-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c8/6944079/f4c1d5f03884/e-76-00102-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c8/6944079/99176a55ff9d/e-76-00102-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c8/6944079/58c78083cea0/e-76-00102-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c8/6944079/49ce548d07a5/e-76-00102-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c8/6944079/5f4699386716/e-76-00102-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c8/6944079/0b8b1fe268e4/e-76-00102-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c8/6944079/f4c1d5f03884/e-76-00102-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c8/6944079/99176a55ff9d/e-76-00102-fig6.jpg

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