• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

N,N'-双(吡啶-3-基甲基)乙二酰胺一水合物:晶体结构、 Hirshfeld表面分析及计算研究

,'-Bis(pyridin-3-ylmeth-yl)ethanedi-amide monohydrate: crystal structure, Hirshfeld surface analysis and computational study.

作者信息

Tan Sang Loon, Tiekink Edward R T

机构信息

Research Centre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia.

出版信息

Acta Crystallogr E Crystallogr Commun. 2020 Jan 1;76(Pt 1):25-31. doi: 10.1107/S2056989019016153.

DOI:10.1107/S2056989019016153
PMID:31921447
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6944093/
Abstract

The mol-ecular structure of the title bis-pyridyl substituted di-amide hydrate, CHNO·HO, features a central CNO residue (r.m.s. deviation = 0.0205 Å) linked at each end to 3-pyridyl rings through methyl-ene groups. The pyridyl rings lie to the same side of the plane, have a -periplanar relationship, and form dihedral angles of 59.71 (6) and 68.42 (6)° with the central plane. An almost orthogonal relationship between the pyridyl rings is indicated by the dihedral angle between them [87.86 (5)°]. Owing to an disposition between the carbonyl-O atoms in the core, two intra-molecular amide-N-H⋯O(carbon-yl) hydrogen bonds are formed, each closing an (5) loop. Supra-molecular tapes are formed in the crystal amide-N-H⋯O(carbon-yl) hydrogen bonds and ten-membered {⋯HNCO} synthons. Two symmetry-related tapes are linked by a helical chain of hydrogen-bonded water mol-ecules water-O-H⋯N(pyrid-yl) hydrogen bonds. The resulting aggregate is parallel to the -axis direction. Links between these, methyl-ene-C-H⋯O(water) and methyl-ene-C-H⋯π(pyrid-yl) inter-actions, give rise to a layer parallel to (10); the layers stack without directional inter-actions between them. The analysis of the Hirshfeld surfaces point to the importance of the specified hydrogen-bonding inter-actions, and to the significant influence of the water mol-ecule of crystallization upon the mol-ecular packing. The analysis also indicates the contribution of methyl-ene-C-H⋯O(carbon-yl) and pyridyl-C-H⋯C(carbon-yl) contacts to the stability of the inter-layer region. The calculated inter-action energies are consistent with importance of significant electrostatic attractions in the crystal.

摘要

标题化合物双吡啶取代二酰胺水合物CHNO·HO的分子结构特点是,一个中心CNO残基(均方根偏差 = 0.0205 Å)通过亚甲基在两端与3-吡啶环相连。吡啶环位于平面的同一侧,具有邻位平面关系,与中心平面形成的二面角分别为59.71(6)°和68.42(6)°。吡啶环之间的二面角[87.86(5)°]表明它们之间几乎呈正交关系。由于核心中羰基-O原子之间的排列方式,形成了两个分子内酰胺-N-H⋯O(羰基)氢键,每个氢键都形成一个(5)环。在晶体中,通过酰胺-N-H⋯O(羰基)氢键和十元{⋯HNCO}合成子形成超分子带。两条对称相关的带通过氢键连接的水分子螺旋链(水-O-H⋯N(吡啶基)氢键)相连。所得聚集体平行于轴方向。这些之间的连接,即亚甲基-C-H⋯O(水)和亚甲基-C-H⋯π(吡啶基)相互作用,产生了一个平行于(10)的层;这些层堆叠时它们之间没有定向相互作用。对Hirshfeld表面的分析表明了特定氢键相互作用的重要性,以及结晶水分子对分子堆积的显著影响。分析还表明亚甲基-C-H⋯O(羰基)和吡啶基-C-H⋯C(羰基)接触对层间区域稳定性的贡献。计算得到的相互作用能与晶体中显著静电吸引的重要性一致。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/5447c377bb8a/e-76-00025-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/8daa8effb0e7/e-76-00025-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/f77f44bdf63d/e-76-00025-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/ae201e7307f5/e-76-00025-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/abce55923ffe/e-76-00025-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/75a565a68022/e-76-00025-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/8fb01a2633d1/e-76-00025-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/5447c377bb8a/e-76-00025-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/8daa8effb0e7/e-76-00025-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/f77f44bdf63d/e-76-00025-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/ae201e7307f5/e-76-00025-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/abce55923ffe/e-76-00025-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/75a565a68022/e-76-00025-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/8fb01a2633d1/e-76-00025-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba9d/6944093/5447c377bb8a/e-76-00025-fig7.jpg

相似文献

1
,'-Bis(pyridin-3-ylmeth-yl)ethanedi-amide monohydrate: crystal structure, Hirshfeld surface analysis and computational study.N,N'-双(吡啶-3-基甲基)乙二酰胺一水合物:晶体结构、 Hirshfeld表面分析及计算研究
Acta Crystallogr E Crystallogr Commun. 2020 Jan 1;76(Pt 1):25-31. doi: 10.1107/S2056989019016153.
2
Crystal structure, Hirshfeld surface analysis and computational study of the 1:2 co-crystal formed between ,'-bis-(pyridin-4-ylmeth-yl)ethane-diamide and 4-chloro-benzoic acid.α,α'-双(吡啶-4-基甲基)乙二酰胺与4-氯苯甲酸形成的1:2共晶体的晶体结构、 Hirshfeld表面分析及计算研究
Acta Crystallogr E Crystallogr Commun. 2020 Jan 21;76(Pt 2):245-253. doi: 10.1107/S2056989020000572. eCollection 2020 Feb 1.
3
The 1:2 co-crystal formed between ,'-bis(pyridin-4-ylmeth-yl)ethanedi-amide and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study.,'-双(吡啶-4-基甲基)乙二酰胺与苯甲酸形成的1:2共晶体:晶体结构、 Hirshfeld表面分析及计算研究
Acta Crystallogr E Crystallogr Commun. 2020 Jan 1;76(Pt 1):102-110. doi: 10.1107/S2056989019016840.
4
Crystal structure, Hirshfeld surface analysis and computational study of the 1:2 co-crystal formed between ,'-bis-[(pyridin-4-yl)meth-yl]ethanedi-amide and 3-chloro-benzoic acid.,'-双[(吡啶-4-基)甲基]乙二酰胺与3-氯苯甲酸形成的1:2共晶体的晶体结构、 Hirshfeld表面分析及计算研究
Acta Crystallogr E Crystallogr Commun. 2020 May 19;76(Pt 6):870-876. doi: 10.1107/S2056989020006568. eCollection 2020 Jun 1.
5
,'-Bis(pyridin-4-ylmeth-yl)oxalamide benzene monosolvate: crystal structure, Hirshfeld surface analysis and computational study.,-双(吡啶-4-基甲基)草酰胺苯单溶剂合物:晶体结构、 Hirshfeld表面分析及计算研究。
Acta Crystallogr E Crystallogr Commun. 2019 Jul 9;75(Pt 8):1133-1139. doi: 10.1107/S2056989019009551. eCollection 2019 Aug 1.
6
A 2:1 co-crystal of 2-methyl-benzoic acid and N,N'-bis-(pyridin-4-ylmeth-yl)ethanedi-amide: crystal structure and Hirshfeld surface analysis.2-甲基苯甲酸与N,N'-双-(吡啶-4-基甲基)乙二酰胺的2:1共晶体:晶体结构与 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2016 Feb 20;72(Pt 3):391-8. doi: 10.1107/S2056989016002735. eCollection 2016 Mar 1.
7
4-[(1)-({[(Benzyl-sulfan-yl)methane-thio-yl]amino}-imino)-meth-yl]benzene-1,3-diol chloro-form hemisolvate: crystal structure, Hirshfeld surface analysis and computational study.4-[(1)-({[(苄基硫烷基)甲硫基]氨基}-亚氨基)-甲基]苯-1,3-二醇氯仿半溶剂化物:晶体结构、 Hirshfeld表面分析及计算研究
Acta Crystallogr E Crystallogr Commun. 2020 Jun 2;76(Pt 7):990-997. doi: 10.1107/S2056989020007070. eCollection 2020 Jul 1.
8
A 2:1 co-crystal of p-nitro-benzoic acid and N,N'-bis-(pyridin-3-ylmeth-yl)ethanedi-amide: crystal structure and Hirshfeld surface analysis.对硝基苯甲酸与N,N'-双(吡啶-3-基甲基)乙二酰胺的2:1共晶体:晶体结构与 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2016 Jan 1;72(Pt 1):76-82. doi: 10.1107/S2056989015024068.
9
Co-crystallization of a neutral mol-ecule and its zwitterionic tautomer: structure and Hirshfeld surface analysis of 5-methyl-4-(5-methyl-1-pyrazol-3-yl)-2-phenyl-2,3-di-hydro-1-pyrazol-3-one 5-methyl-4-(5-methyl-1-pyrazol-2-ium-3-yl)-3-oxo-2-phenyl-2,3-di-hydro-1-pyrazol-1-ide monohydrate.一种中性分子与其两性离子互变异构体的共结晶:5-甲基-4-(5-甲基-1-吡唑-3-基)-2-苯基-2,3-二氢-1-吡唑-3-酮5-甲基-4-(5-甲基-1-吡唑-2-鎓-3-基)-3-氧代-2-苯基-2,3-二氢-1-吡唑-1-化物一水合物的结构和 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2019 Apr 5;75(Pt 5):565-570. doi: 10.1107/S2056989019004389. eCollection 2019 May 1.
10
-(6-Meth-oxy-pyridin-2-yl)-1-(pyridin-2-ylmeth-yl)-1-pyrazole-3-carboxamide: crystal structure and Hirshfeld surface analysis.-(6-甲氧基吡啶-2-基)-1-(吡啶-2-基甲基)-1-吡唑-3-甲酰胺:晶体结构与 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2018 Aug 16;74(Pt 9):1254-1258. doi: 10.1107/S2056989018011477. eCollection 2018 Sep 1.

引用本文的文献

1
Evidence for the Hydration of Some Organic Compounds during Reverse-Phase HPLC Analysis.某些有机化合物在反相高效液相色谱分析过程中发生水合作用的证据。
Molecules. 2023 Jan 11;28(2):734. doi: 10.3390/molecules28020734.
2
The 1:2 co-crystal formed between ,'-bis(pyridin-4-ylmeth-yl)ethanedi-amide and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study.,'-双(吡啶-4-基甲基)乙二酰胺与苯甲酸形成的1:2共晶体:晶体结构、 Hirshfeld表面分析及计算研究
Acta Crystallogr E Crystallogr Commun. 2020 Jan 1;76(Pt 1):102-110. doi: 10.1107/S2056989019016840.

本文引用的文献

1
,'-Bis(pyridin-4-ylmeth-yl)oxalamide benzene monosolvate: crystal structure, Hirshfeld surface analysis and computational study.,-双(吡啶-4-基甲基)草酰胺苯单溶剂合物:晶体结构、 Hirshfeld表面分析及计算研究。
Acta Crystallogr E Crystallogr Commun. 2019 Jul 9;75(Pt 8):1133-1139. doi: 10.1107/S2056989019009551. eCollection 2019 Aug 1.
2
Utilizing Hirshfeld surface calculations, non-covalent inter-action (NCI) plots and the calculation of inter-action energies in the analysis of mol-ecular packing.利用 Hirshfeld 表面计算、非共价相互作用(NCI)图以及相互作用能计算来分析分子堆积。
Acta Crystallogr E Crystallogr Commun. 2019 Feb 5;75(Pt 3):308-318. doi: 10.1107/S2056989019001129. eCollection 2019 Mar 1.
3
A 1:2 co-crystal of 2,2'-di-thiodi-benzoic acid and benzoic acid: crystal structure, Hirshfeld surface analysis and computational study.2,2'-二硫代二苯甲酸与苯甲酸的1:2共晶体:晶体结构、 Hirshfeld表面分析及计算研究
Acta Crystallogr E Crystallogr Commun. 2019 Jan 1;75(Pt 1):1-7. doi: 10.1107/S2056989018017097.
4
Directing the Crystallization of Dehydro[24]annulenes into Supramolecular Nanotubular Scaffolds.指导去氢[24]轮烯的结晶形成超分子纳米管状支架。
J Am Chem Soc. 2016 May 11;138(18):5939-56. doi: 10.1021/jacs.6b01939. Epub 2016 May 2.
5
A 2:1 co-crystal of p-nitro-benzoic acid and N,N'-bis-(pyridin-3-ylmeth-yl)ethanedi-amide: crystal structure and Hirshfeld surface analysis.对硝基苯甲酸与N,N'-双(吡啶-3-基甲基)乙二酰胺的2:1共晶体:晶体结构与 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2016 Jan 1;72(Pt 1):76-82. doi: 10.1107/S2056989015024068.
6
Synthesis of the Stable Ordered Conjugated Polymer Poly(dibromodiacetylene) from an Explosive Monomer.由爆炸单体合成稳定有序共轭聚合物聚二溴代二乙炔。
Angew Chem Int Ed Engl. 2015 Dec 1;54(49):14690-5. doi: 10.1002/anie.201504713. Epub 2015 Oct 8.
7
2,2'-(Disulfanediyl)dibenzoic acid-N,N'-bis-(3-pyridyl-meth-yl)ethane-diamide (1/1).2,2'-(二硫代二亚基)二苯甲酸 - N,N'-双 -(3 - 吡啶 - 甲基)乙二酰胺(1/1)
Acta Crystallogr Sect E Struct Rep Online. 2010 Sep 18;66(Pt 10):o2590-1. doi: 10.1107/S1600536810036494.
8
Structure validation in chemical crystallography.化学晶体学中的结构验证
Acta Crystallogr D Biol Crystallogr. 2009 Feb;65(Pt 2):148-55. doi: 10.1107/S090744490804362X. Epub 2009 Jan 20.
9
Pressure-induced polymerization of diiodobutadiyne in assembled cocrystals.组装共晶体中压力诱导的二碘丁二炔聚合反应。
J Am Chem Soc. 2008 Apr 2;130(13):4415-20. doi: 10.1021/ja0782910. Epub 2008 Mar 12.
10
Designed cocrystals based on the pyridine-iodoalkyne halogen bond.基于吡啶-碘代炔烃卤素键设计的共晶体。
Org Lett. 2005 May 12;7(10):1891-3. doi: 10.1021/ol050184s.