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,-双(吡啶-4-基甲基)草酰胺苯单溶剂合物:晶体结构、 Hirshfeld表面分析及计算研究。

,'-Bis(pyridin-4-ylmeth-yl)oxalamide benzene monosolvate: crystal structure, Hirshfeld surface analysis and computational study.

作者信息

Tan Sang Loon, Halcovitch Nathan R, Tiekink Edward R T

机构信息

Research Centre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia.

Department of Chemistry, Lancaster University, Lancaster LA1 4YB, United Kingdom.

出版信息

Acta Crystallogr E Crystallogr Commun. 2019 Jul 9;75(Pt 8):1133-1139. doi: 10.1107/S2056989019009551. eCollection 2019 Aug 1.

DOI:10.1107/S2056989019009551
PMID:31417779
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6690468/
Abstract

The asymmetric unit of the title 1:1 solvate, CHNO·CH [systematic name of the oxalamide mol-ecule: ,'-bis-(pyridin-4-ylmeth-yl)ethanedi-amide], comprises a half mol-ecule of each constituent as each is disposed about a centre of inversion. In the oxalamide mol-ecule, the central CNO atoms are planar (r.m.s. deviation = 0.0006 Å). An intra-molecular amide-N-H⋯O(amide) hydrogen bond is evident, which gives rise to an (5) loop. Overall, the mol-ecule adopts an anti-periplanar disposition of the pyridyl rings, and an orthogonal relationship is evident between the central plane and each terminal pyridyl ring [dihedral angle = 86.89 (3)°]. In the crystal, supra-molecular layers parallel to (10) are generated owing the formation of amide-N-H⋯N(pyrid-yl) hydrogen bonds. The layers stack encompassing benzene mol-ecules which provide the links between layers methyl-ene-C-H⋯π(benzene) and benzene-C-H⋯π(pyrid-yl) inter-actions. The specified contacts are indicated in an analysis of the calculated Hirshfeld surfaces. The energy of stabilization provided by the conventional hydrogen bonding (approximately 40 kJ mol; electrostatic forces) is just over double that by the C-H⋯π contacts (dispersion forces).

摘要

标题为1:1溶剂化物CHNO·CH[草酰胺分子的系统名称:,'-双-(吡啶-4-基甲基)乙二酰胺]的不对称单元包含每种组分的半个分子,因为每个分子都围绕一个反演中心排列。在草酰胺分子中,中心CNO原子呈平面状(均方根偏差 = 0.0006 Å)。分子内酰胺-N-H⋯O(酰胺)氢键明显,形成了一个(5)环。总体而言,分子中吡啶环呈反式-邻位平面排列,中心平面与每个末端吡啶环之间呈正交关系[二面角 = 86.89 (3)°]。在晶体中,由于酰胺-N-H⋯N(吡啶基)氢键的形成,产生了平行于(10)的超分子层。这些层堆叠时包含苯分子,苯分子提供了层间的连接 亚甲基-C-H⋯π(苯)和苯-C-H⋯π(吡啶基)相互作用。在对计算的Hirshfeld表面的分析中指出了特定的接触。传统氢键提供的稳定化能量(约40 kJ mol;静电力)刚好是C-H⋯π接触(色散力)的两倍多。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/2036649a8a0d/e-75-01133-fig10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/b39aa87a029d/e-75-01133-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/bfea48ba1db6/e-75-01133-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/6636ab2194f1/e-75-01133-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/6de932a0b8e3/e-75-01133-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/68877bc7e575/e-75-01133-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/a987c1b83436/e-75-01133-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/eb7a3bb73725/e-75-01133-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/95489c88ce62/e-75-01133-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/c5cda1a874d7/e-75-01133-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/2036649a8a0d/e-75-01133-fig10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/b39aa87a029d/e-75-01133-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/bfea48ba1db6/e-75-01133-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/6636ab2194f1/e-75-01133-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/6de932a0b8e3/e-75-01133-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/68877bc7e575/e-75-01133-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/a987c1b83436/e-75-01133-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/eb7a3bb73725/e-75-01133-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/95489c88ce62/e-75-01133-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/c5cda1a874d7/e-75-01133-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6edf/6690468/2036649a8a0d/e-75-01133-fig10.jpg

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本文引用的文献

1
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Acta Crystallogr E Crystallogr Commun. 2019 Feb 5;75(Pt 3):308-318. doi: 10.1107/S2056989019001129. eCollection 2019 Mar 1.
2
A 2:1 co-crystal of 2-methyl-benzoic acid and N,N'-bis-(pyridin-4-ylmeth-yl)ethanedi-amide: crystal structure and Hirshfeld surface analysis.2-甲基苯甲酸与N,N'-双-(吡啶-4-基甲基)乙二酰胺的2:1共晶体:晶体结构与 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2016 Feb 20;72(Pt 3):391-8. doi: 10.1107/S2056989016002735. eCollection 2016 Mar 1.
3
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Acta Crystallogr E Crystallogr Commun. 2020 Jan 1;76(Pt 1):102-110. doi: 10.1107/S2056989019016840.
4
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Acta Crystallogr E Crystallogr Commun. 2020 Jan 1;76(Pt 1):25-31. doi: 10.1107/S2056989019016153.
Hydrogen-bonded supramolecular networks of N,N'-bis(4-pyridylmethyl)oxalamide and 4,4'-{[oxalylbis(azanediyl)]dimethylene}dipyridinium dinitrate.N,N'-双(4-吡啶甲基)草酰胺与4,4'-{[草酰双(氮杂二亚基)]二亚甲基}二吡啶二硝酸盐的氢键超分子网络
Acta Crystallogr C. 2010 May;66(Pt 5):o241-4. doi: 10.1107/S0108270110010280. Epub 2010 Apr 13.
4
Hydrogen-bonded supramolecule of N,N'-bis(4-pyridylmethyl)oxalamide and a zigzag chain structure of catena-poly[[[dichloridocobalt(II)]-mu-N,N'-bis(4-pyridylmethyl)oxalamide-kappa2N4:N4'] hemihydrate].N,N'-双(4-吡啶基甲基)草酰胺的氢键超分子以及链状-聚[[[二氯化钴(II)]-μ-N,N'-双(4-吡啶基甲基)草酰胺-κ2N4:N4']半水合物]的锯齿链结构
Acta Crystallogr C. 2007 May;63(Pt 5):m216-9. doi: 10.1107/S0108270107014527. Epub 2007 Apr 21.
5
Designed cocrystals based on the pyridine-iodoalkyne halogen bond.基于吡啶-碘代炔烃卤素键设计的共晶体。
Org Lett. 2005 May 12;7(10):1891-3. doi: 10.1021/ol050184s.
6
Commensurate and incommensurate hydrogen bonds. An exercise in crystal engineering.相称与不相称氢键。晶体工程实例。
J Am Chem Soc. 2001 Nov 7;123(44):11057-64. doi: 10.1021/ja016635v.
7
Qmol: a program for molecular visualization on Windows-based PCs.Qmol:一款用于在基于Windows的个人电脑上进行分子可视化的程序。
J Mol Graph Model. 2001;19(6):557-9, 609. doi: 10.1016/s1093-3263(01)00090-0.