Park Su-Chan, Neidhart Johannes, Krug Joachim
Department of Physics, The Catholic University of Korea, Bucheon 14662, Republic of Korea.
Institut für Theoretische Physik, Universität zu Köln, 50937 Köln, Germany.
J Theor Biol. 2016 May 21;397:89-102. doi: 10.1016/j.jtbi.2016.02.035. Epub 2016 Mar 4.
We study adaptation of a haploid asexual population on a fitness landscape defined over binary genotype sequences of length L. We consider greedy adaptive walks in which the population moves to the fittest among all single mutant neighbors of the current genotype until a local fitness maximum is reached. The landscape is of the rough mount Fuji type, which means that the fitness value assigned to a sequence is the sum of a random and a deterministic component. The random components are independent and identically distributed random variables, and the deterministic component varies linearly with the distance to a reference sequence. The deterministic fitness gradient c is a parameter that interpolates between the limits of an uncorrelated random landscape (c=0) and an effectively additive landscape (c→∞). When the random fitness component is chosen from the Gumbel distribution, explicit expressions for the distribution of the number of steps taken by the greedy walk are obtained, and it is shown that the walk length varies non-monotonically with the strength of the fitness gradient when the starting point is sufficiently close to the reference sequence. Asymptotic results for general distributions of the random fitness component are obtained using extreme value theory, and it is found that the walk length attains a non-trivial limit for L→∞, different from its values for c=0 and c=∞, if c is scaled with L in an appropriate combination.
我们研究了单倍体无性繁殖群体在长度为L的二元基因型序列定义的适应度景观上的适应性。我们考虑贪婪适应性游走,即群体移动到当前基因型的所有单突变邻居中最适应的基因型,直到达到局部适应度最大值。该景观是粗糙富士山类型,这意味着分配给一个序列的适应度值是一个随机分量和一个确定性分量的总和。随机分量是独立同分布的随机变量,而确定性分量随与参考序列的距离线性变化。确定性适应度梯度c是一个参数,它在不相关随机景观(c = 0)和有效加性景观(c→∞)的极限之间进行插值。当随机适应度分量从耿贝尔分布中选取时,得到了贪婪游走步数分布的显式表达式,并且表明当起点足够接近参考序列时,游走长度随适应度梯度强度非单调变化。使用极值理论获得了随机适应度分量一般分布的渐近结果,并且发现如果c以适当的组合与L进行缩放,对于L→∞,游走长度达到一个非平凡的极限,这与c = 0和c = ∞时的值不同。